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List of works by John P Barton

ACE: adaptive cluster expansion for maximum entropy graphical model inference

scientific article

Characterization of Intact Proviruses in Blood and Lymph Node from HIV-Infected Individuals Undergoing Analytical Treatment Interruption

article

Cross-serotypically conserved epitope recommendations for a universal T cell-based dengue vaccine

scientific article published on 21 September 2020

Deconstruction of the Ras switching cycle through saturation mutagenesis

scientific article

Fitness landscape of the human immunodeficiency virus envelope protein that is targeted by antibodies.

scientific article published on 8 January 2018

Large pseudocounts and L2-norm penalties are necessary for the mean-field inference of Ising and Potts models ⬇️

scientific article published on 28 July 2014

MPL resolves genetic linkage in fitness inference from complex evolutionary histories

scientific article published on 30 November 2020

Modelling and in vitro testing of the HIV-1 Nef fitness landscape

scientific article published on 01 July 2019

Paired quantitative and qualitative assessment of the replication-competent HIV-1 reservoir and comparison with integrated proviral DNA.

scientific article published on 21 November 2016

Rational design of vaccine targets and strategies for HIV: a crossroad of statistical physics, biology, and medicine

scientific article

Relationship between latent and rebound viruses in a clinical trial of anti-HIV-1 antibody 3BNC117

article

Role of framework mutations and antibody flexibility in the evolution of broadly neutralizing antibodies.

scientific article published on 14 February 2018

Spin models inferred from patient-derived viral sequence data faithfully describe HIV fitness landscapes

scientific article

The fitness landscape of HIV-1 gag: advanced modeling approaches and validation of model predictions by in vitro testing

scientific article

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