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List of works by Andrey Rzhetsky

A Distributed Look-up Architecture for Text Mining Applications using MapReduce

scholarly article published November 2011

A Nondegenerate Code of Deleterious Variants in Mendelian Loci Contributes to Complex Disease Risk

scientific article (publication date: September 2013)

A Novel Hypothesis Regarding the Evolutionary Origins of the Immunoglobulin Fold

scientific article published on 01 January 2000

A distributed look-up architecture for text mining applications using MapReduce

article published in 2011

A graphic editor for analyzing signal-transduction pathways

scientific article published in December 2000

A knowledge model for analysis and simulation of regulatory networks.

scientific article published on December 2000

A recipe for high impact

scientific article

A spatial map of olfactory receptor expression in the Drosophila antenna.

scientific article

Advancing science through mining libraries, ontologies, and communities

scientific article

Analysis of Drosophila segmentation network identifies a JNK pathway factor overexpressed in kidney cancer.

scientific article published on 22 January 2009

Analysis of a 69-kb contiguous genomic sequence at a putative tumor suppressor gene locus on human chromosome 6q27.

scientific article published in January 1998

Automated microfluidic platform for dynamic and combinatorial drug screening of tumor organoids

scientific article published on 19 October 2020

Automatically identifying gene/protein terms in MEDLINE abstracts.

scientific article published in October 2002

Benchmarking ontologies: bigger or better?

scientific article

Birth and death of protein domains: a simple model of evolution explains power law behavior

scientific article

Birth of scale-free molecular networks and the number of distinct DNA and protein domains per genome.

scientific article published in October 2001

Centralized scientific communities are less likely to generate replicable results

scientific article published on 2 July 2019

Choosing experiments to accelerate collective discovery

scientific article

Classification of common human diseases derived from shared genetic and environmental determinants

scientific article published on 07 August 2017

Conflicting biomedical assumptions for mathematical modeling: the case of cancer metastasis

scientific article

Conjunction of factors triggering waves of seasonal influenza

scientific article

Corrigendum: The BioPAX community standard for pathway data sharing

correction; published 7 December 2010

Dissecting schizophrenia phenotypic variation: the contribution of genetic variation, environmental exposures, and gene–environment interactions

scientific article published in 2022

Emergent behavior of growing knowledge about molecular interactions.

scientific article published in October 2005

Environmental and state-level regulatory factors affect the incidence of autism and intellectual disability

scientific article

Environmental pollution is associated with increased risk of psychiatric disorders in the US and Denmark

scientific article published on 20 August 2019

Erratum: Corrigendum: The BioPAX community standard for pathway data sharing

scholarly article published in Nature Biotechnology

Estimating heritability and genetic correlations from large health datasets in the absence of genetic data

scientific article published on 03 December 2019

Evolutionary relationships of eukaryotic kingdoms

scientific article published on February 1996

Exon/intron structure of aldehyde dehydrogenase genes supports the "introns-late" theory.

scientific article

GENIES: a natural-language processing system for the extraction of molecular pathways from journal articles.

scientific article published in January 2001

GeneWays: a system for extracting, analyzing, visualizing, and integrating molecular pathway data

scientific article

Genetic similarity between cancers and comorbid Mendelian diseases identifies candidate driver genes

scientific article published on 30 April 2015

Getting started in text mining: part two.

scientific article

Health ROI as a measure of misalignment of biomedical needs and resources

scientific article published on August 2015

How many scientific papers should be retracted?

scientific article published on May 2007

How to get the most out of your curation effort

scientific article

Human aldehyde dehydrogenase gene family.

scientific article

Human and mouse orthologs of a new ATP-binding cassette gene, ABCG4.

scientific article

Imitating manual curation of text-mined facts in biomedicine

scientific article

Imitating manual curation of text-mined facts in biomedicine

article published in 2005

Immunity-related genes and gene families in Anopheles gambiae

scientific article published in October 2002

Listening to viral tongues: comparing viral trees using a stochastic context-free grammar.

scientific article published on 29 December 2004

Looking at cerebellar malformations through text-mined interactomes of mice and humans

scientific article

Measurable health effects associated with the daylight saving time shift

scientific article published on 08 June 2020

Mining biomedical texts for disease-related pathways

Molecular triangulation: bridging linkage and molecular-network information for identifying candidate genes in Alzheimer's disease.

scholarly article

NERO: a biomedical named-entity (recognition) ontology with a large, annotated corpus reveals meaningful associations through text embedding

scientific article published on 20 October 2021

Network properties of genes harboring inherited disease mutations

scholarly article

New directions in biomedical text annotation: definitions, guidelines and corpus construction

scientific article

Novel opportunities for computational biology and sociology in drug discovery.

scientific article published on 10 August 2009

Observable variations in human sex ratio at birth

scientific article published on 02 December 2021

Of truth and pathways: chasing bits of information through myriads of articles.

scientific article

Origin of the metazoan phyla: Molecular clocks confirm paleontological estimates ⬇️

scientific article published on January 20, 1998

Patchwork of contrasting medication cultures across the USA

scientific article published in Nature Communications

Philosophy of science. Machine science

scientific article

Postnatal immune activation causes social deficits in a mouse model of tuberous sclerosis: Role of microglia and clinical implications

scientific article published on 17 September 2021

Probabilistic inference of molecular networks from noisy data sources

scientific article

Probing genetic overlap among complex human phenotypes.

scholarly article

Quantifying the impact and extent of undocumented biomedical synonymy

scientific article

Quantitative systems-level determinants of human genes targeted by successful drugs.

scientific article

Quick assessment of similarity of two sequences by comparison of their L-tuple frequencies

scientific article published on 01 January 1993

RIDDLE: Race and ethnicity Imputation from Disease history with Deep LEarning.

scientific article published on 26 April 2018

Representation of probabilistic scientific knowledge

scientific article published on 15 April 2013

Representation of research hypotheses ⬇️

scientific article published on 17 May 2011

Response by Cokol et al.

scientific article published in September 2007

Seeking a new biology through text mining

scientific article published on July 2008

Self-correcting maps of molecular pathways

scientific article

Six senses in the literature. The bleak sensory landscape of biomedical texts

scientific article (publication date: March 2008)

Statistical properties of the ordinary least-squares, generalized least-squares, and minimum-evolution methods of phylogenetic inference

scientific article published on October 1992

The BioPAX community standard for pathway data sharing

scientific article (publication date: September 2010)

The Genomic Sequence of the Accidental Pathogen Legionella pneumophila

scientific article

The human ATP-binding cassette (ABC) transporter superfamily

scientific article (publication date: July 2001)

Tools for visualization and integration of intermediate sequencing results in large disease gene discovery projects.

scientific article

Tradition and Innovation in Scientists’ Research Strategies

article

Ultra-multiplexed analysis of single-cell dynamics reveals logic rules in differentiation

scientific article published on 03 April 2019

Unbiased estimates of the number of nucleotide substitutions when substitution rate varies among different sites

scientific article published in March 1994

Understanding Toxoplasmosis in the United States Through "Large Data" Analyses

scientific article

Using BLAST for identifying gene and protein names in journal articles.

scientific article published in December 2000

VOSTORG: a package of microcomputer programs for sequence analysis and construction of phylogenetic trees

scientific article

War of ontology worlds: mathematics, computer code, or Esperanto?

scientific article

When is it safe to use an oversimplified substitution model in tree-making?

scientific article published in November 1996

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