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List of works by Jörg Hakenberg

A SNPshot of PubMed to associate genetic variants with drugs, diseases, and adverse reactions

scientific article

A comprehensive benchmark of kernel methods to extract protein-protein interactions from literature

scientific article

AliBaba: PubMed as a graph

scientific article

An integrative pipeline for multi-modal discovery of disease relationships

scientific article published on January 2015

Author Correction: Predicting the clinical impact of human mutation with deep neural networks

scientific article published on 01 February 2019

Biomedical word sense disambiguation with ontologies and metadata: automation meets accuracy

scientific article

ClinLabGeneticist: a tool for clinical management of genetic variants from whole exome sequencing in clinical genetic laboratories

scientific article published on 29 July 2015

DIVAS: a centralized genetic variant repository representing 150,000 individuals from multiple disease cohorts

scientific article published on 12 September 2015

Disease-associated variants in different categories of disease located in distinct regulatory elements

scientific article published on 18 June 2015

Efficient extraction of protein-protein interactions from full-text articles

scientific article

Finding kinetic parameters using text mining

scientific article published in January 2004

Gene mention normalization and interaction extraction with context models and sentence motifs.

scientific article published on September 2008

Integrating 400 million variants from 80,000 human samples with extensive annotations: towards a knowledge base to analyze disease cohorts

scientific article published on 8 January 2016

Introducing meta-services for biomedical information extraction

scientific article published on September 2008

Literature mining solutions for life science research

scientific article published on 8 January 2013

MAPPP: MHC class I antigenic peptide processing prediction.

scientific article

Predicting the clinical impact of human mutation with deep neural networks

scientific article published on 23 July 2018

Querying parse tree database of Medline text to synthesize user-specific biomolecular networks.

scientific article published in January 2009

Synthesis of pharmacokinetic pathways through knowledge acquisition and automated reasoning.

scientific article published in January 2010

Systematic feature evaluation for gene name recognition

scientific article published on 24 May 2005

The GNAT library for local and remote gene mention normalization

scientific article

What makes a gene name? Named entity recognition in the biomedical literature

scientific article

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