List of works - Yulia Medvedeva

A deeper look into transcription regulatory code by preferred pair distance templates for transcription factor binding sites

scientific article

A promoter-level mammalian expression atlas

scientific article

An atlas of human long non-coding RNAs with accurate 5' ends.

scientific article

An integrated expression atlas of miRNAs and their promoters in human and mouse.

scientific article

Asymmetry of the GC content in vicinity of transcription starts (with participation of polymerase PoII) and its correlation with location of adsorption sites of protein SP1 on DNA

scientific article published on November 2010

Computational analysis of sense-antisense chimeric transcripts reveals their potential regulatory features and the landscape of expression in human cells

scientific article published on 25 August 2021

Direct Interactions with Nascent Transcripts Is Potentially a Common Targeting Mechanism of Long Non-Coding RNAs

scientific article published on 10 December 2020

Effects of cytosine methylation on transcription factor binding sites

scientific article

EpiFactors: a comprehensive database of human epigenetic factors and complexes

scientific article

Exploring massive, genome scale datasets with the GenometriCorr package

scientific article

Genome-Wide DNA Methylation Profiling Reveals Epigenetic Adaptation of Stickleback to Marine and Freshwater Conditions

scientific article published in September 2017

HOCOMOCO: a comprehensive collection of human transcription factor binding sites models

scientific article

HOCOMOCO: expansion and enhancement of the collection of transcription factor binding sites models.

scientific article

Heavy-light chain interrelations of MS-associated immunoglobulins probed by deep sequencing and rational variation

scientific article

Identification of self-consistent modulons from bacterial microarray expression data with the help of structured regulon gene sets

scientific article

Insights into the Transcriptional Architecture of Behavioral Plasticity in the Honey Bee Apis mellifera

scientific article published on 15 June 2015

Intergenic, gene terminal, and intragenic CpG islands in the human genome

scientific article

Mutations and binding sites of human transcription factors

scientific article

Perinatal exposure to low dose 2,2',4,4'-tetrabromodiphenyl ether (BDE-47) alters sperm DNA methylation in adult rats

scientific article published on 28 October 2017

Preservation of methylated CpG dinucleotides in human CpG islands

scientific article published on 22 March 2016

Promoter analysis reveals globally differential regulation of human long non-coding RNA and protein-coding genes

scientific article

Regional differences in gene expression and promoter usage in aged human brains.

scientific article

Update of the FANTOM web resource: high resolution transcriptome of diverse cell types in mammals

scientific article published on 27 October 2016

Using the operonic gene pairs for establishing the treshold for correlation coefficient of differently expressed genes

scientific article

List of works by Yulia Medvedeva

A deeper look into transcription regulatory code by preferred pair distance templates for transcription factor binding sites

A promoter-level mammalian expression atlas

An atlas of human long non-coding RNAs with accurate 5' ends.

An integrated expression atlas of miRNAs and their promoters in human and mouse.

Asymmetry of the GC content in vicinity of transcription starts (with participation of polymerase PoII) and its correlation with location of adsorption sites of protein SP1 on DNA

Computational analysis of sense-antisense chimeric transcripts reveals their potential regulatory features and the landscape of expression in human cells

Direct Interactions with Nascent Transcripts Is Potentially a Common Targeting Mechanism of Long Non-Coding RNAs

Effects of cytosine methylation on transcription factor binding sites

EpiFactors: a comprehensive database of human epigenetic factors and complexes

Exploring massive, genome scale datasets with the GenometriCorr package

Genome-Wide DNA Methylation Profiling Reveals Epigenetic Adaptation of Stickleback to Marine and Freshwater Conditions

HOCOMOCO: a comprehensive collection of human transcription factor binding sites models

HOCOMOCO: expansion and enhancement of the collection of transcription factor binding sites models.

Heavy-light chain interrelations of MS-associated immunoglobulins probed by deep sequencing and rational variation

Identification of self-consistent modulons from bacterial microarray expression data with the help of structured regulon gene sets

Insights into the Transcriptional Architecture of Behavioral Plasticity in the Honey Bee Apis mellifera

Intergenic, gene terminal, and intragenic CpG islands in the human genome

Mutations and binding sites of human transcription factors

Perinatal exposure to low dose 2,2',4,4'-tetrabromodiphenyl ether (BDE-47) alters sperm DNA methylation in adult rats

Preservation of methylated CpG dinucleotides in human CpG islands

Promoter analysis reveals globally differential regulation of human long non-coding RNA and protein-coding genes

Regional differences in gene expression and promoter usage in aged human brains.

Update of the FANTOM web resource: high resolution transcriptome of diverse cell types in mammals

Using the operonic gene pairs for establishing the treshold for correlation coefficient of differently expressed genes