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List of works by Keith A Jolley

2-Oxoacid dehydrogenase multienzyme complexes in the halophilic Archaea? Gene sequences and protein structural predictions

scientific article published on May 2000

A Gene-By-Gene Approach to Bacterial Population Genomics: Whole Genome MLST of Campylobacter.

scientific article published on 12 April 2012

A RESTful application programming interface for the PubMLST molecular typing and genome databases.

scientific article published in January 2017

A Whole-Genome-Based Gene-by-Gene Typing System for Standardized High-Resolution Strain Typing of Bacillus anthracis

scientific article published on 18 June 2021

A chromosomally integrated bacteriophage in invasive meningococci ⬇️

scientific article

A common gene pool for the Neisseria FetA antigen.

scientific article published on 20 August 2008

A comprehensive resource for Bordetella genomic epidemiology and biodiversity studies

scientific article published in 2022

A curated public database for multilocus sequence typing (MLST) and analysis of Haemophilus parasuis based on an optimized typing scheme

scientific article published on 20 November 2012

A gene-by-gene population genomics platform: de novo assembly, annotation and genealogical analysis of 108 representative Neisseria meningitidis genomes

scientific article published on 18 December 2014

A genomic approach to bacterial taxonomy: an examination and proposed reclassification of species within the genus Neisseria.

scientific article

A public database for the new MLST scheme for subsp. : surveillance and epidemiology of the causative agent of syphilis

scientific article published in 2019

A reference pan-genome approach to comparative bacterial genomics: identification of novel epidemiological markers in pathogenic Campylobacter.

scientific article

A surveillance network for meningococcal disease in Europe.

scientific article published on December 2006

Activation of human dendritic cells by the PorA protein of Neisseria meningitidis

scientific article published in July 2004

AgdbNet - antigen sequence database software for bacterial typing

scientific article published on 21 June 2006

An MLST approach to support tracking of plasmids carrying OXA-48-like carbapenemase

scientific article published on 01 July 2019

Antigenic Shift and Increased Incidence of Meningococcal Disease

scientific article published on 28 March 2006

Author Correction: Genome evolution and the emergence of pathogenicity in avian Escherichia coli

correction of a scholarly article

Automated extraction of typing information for bacterial pathogens from whole genome sequence data: Neisseria meningitidis as an exemplar.

scientific article

BIGSdb: Scalable analysis of bacterial genome variation at the population level.

scientific article

Biofilm Morphotypes and Population Structure among Staphylococcus epidermidis from Commensal and Clinical Samples.

scientific article

Carried Meningococci in the Czech Republic: a Diverse Recombining Population.

scientific article published in September 2002

Changes in serogroup and genotype prevalence among carried meningococci in the United Kingdom during vaccine implementation

scientific article

Clinical Clostridium difficile: clonality and pathogenicity locus diversity

scientific article

Clonal Expansion of New Penicillin-Resistant Clade of Neisseria meningitidis Serogroup W Clonal Complex 11, Australia.

scientific article

Clonal distribution of disease-associated and healthy carrier isolates of Neisseria meningitidis between 1983 and 2005 in Cuba

scientific article

Comparative Analysis of the Two Acinetobacter baumannii Multilocus Sequence Typing (MLST) Schemes

scientific article published on 03 May 2019

Comparison of three molecular typing methods to assess genetic diversity for Mycobacterium tuberculosis

scientific article published on 10 February 2013

Computational methods for meningococcal population studies.

scientific article published on January 2001

Core Genome Multilocus Sequence Typing Scheme for Stable, Comparative Analyses of Campylobacter jejuni and C. coli Human Disease Isolates

scientific article

Correction for van Tonder et al., Genomics Reveals the Worldwide Distribution of Multidrug-Resistant Serotype 6E Pneumococci

scientific article published on June 2016

Correction: Biofilm Morphotypes and Population Structure among Staphylococcus epidermidis from Commensal and Clinical Samples

scientific article

Cronobacter, the emergent bacterial pathogen Enterobacter sakazakii comes of age; MLST and whole genome sequence analysis

scientific article

Cryptic ecology among host generalist Campylobacter jejuni in domestic animals

scientific article

Dam inactivation in Neisseria meningitidis: prevalence among diverse hyperinvasive lineages

scientific article

Database for the ampC alleles in Acinetobacter baumannii

scientific article

Defining a Core Genome Multilocus Sequence Typing Scheme for the Global Epidemiology of Vibrio parahaemolyticus

scientific article

Defining the estimated core genome of bacterial populations using a Bayesian decision model

scientific article

Description and nomenclature of Neisseria meningitidis capsule locus

scientific article published on April 2013

Detection of OXA-48-like-producing Enterobacterales in Irish recreational water

scientific article published on 30 June 2019

Development of an unambiguous and discriminatory multilocus sequence typing scheme for the Streptococcus zooepidemicus group

scientific article published on October 2008

Disease-associated genotypes of the commensal skin bacterium Staphylococcus epidermidis

scientific article published in Nature Communications

Distribution of serogroups and genotypes among disease-associated and carried isolates of Neisseria meningitidis from the Czech Republic, Greece, and Norway

scientific article

Domestication of Campylobacter jejuni NCTC 11168

scientific article published on 16 July 2019

Ecological Overlap and Horizontal Gene Transfer in Staphylococcus aureus and Staphylococcus epidermidis.

scientific article published on 16 April 2015

Evolution of Sequence Type 4821 Clonal Complex Hyperinvasive and Quinolone-Resistant Meningococci

scientific article published on 01 April 2021

Evolution of an agriculture-associated disease causing Campylobacter coli clade: evidence from national surveillance data in Scotland

scientific article (publication date: 15 December 2010)

First insights into the evolution of Streptococcus uberis: a multilocus sequence typing scheme that enables investigation of its population biology

scientific article

Frequent capsule switching in 'ultra-virulent' meningococci - Are we ready for a serogroup B ST-11 complex outbreak?

scientific article published on June 2017

Genetic Analysis of Meningococci Carried by Children and Young Adults

article

Genetic and Antigenic Characterization of Neisseria meningitidis Strains from Turkish Recruits in 2006

scientific article published on 04 November 2008

Genetic diversity and carriage dynamics of Neisseria lactamica in infants

scientific article

Genome evolution and the emergence of pathogenicity in avian Escherichia coli

scientific article published in 2021

Genome sequence analyses show that Neisseria oralis is the same species as 'Neisseria mucosa var. heidelbergensis'.

scientific article published on October 2013

Genome-Based Characterization of Emergent Invasive Neisseria meningitidis Serogroup Y Isolates in Sweden from 1995 to 2012. ⬇️

scientific article published on 29 April 2015

Genome-wide association of functional traits linked with Campylobacter jejuni survival from farm to fork

scientific article

Genome-wide association of functional traits linked with Campylobacter jejuni survival from farm to fork

Genome-wide association of functional traits linked with Campylobacter jejuni survival from farm to fork

article published in 2016

Genome-wide association study identifies vitamin B5 biosynthesis as a host specificity factor in Campylobacter

scientific article

Genomic Analyses of >3,100 Nasopharyngeal Pneumococci Revealed Significant Differences Between Pneumococci Recovered in Four Different Geographical Regions

scientific article published on 25 February 2019

Genomic analyses of the Chlamydia trachomatis core genome show an association between chromosomal genome, plasmid type and disease

scientific article published on 9 February 2018

Genomic epidemiology of Campylobacter jejuni associated with asymptomatic pediatric infection in the Peruvian Amazon

scientific article published on 10 August 2020

Genomic epidemiology of age-associated meningococcal lineages in national surveillance: an observational cohort study

scientific article published on 26 October 2015

Genomic evidence for the evolution of Streptococcus equi: host restriction, increased virulence, and genetic exchange with human pathogens

scientific article

Genomic resolution of an aggressive, widespread, diverse and expanding meningococcal serogroup B, C and W lineage

scientific article

Genomics Reveals the Worldwide Distribution of Multidrug-Resistant Serotype 6E Pneumococci

scientific article published on 13 May 2015

Genotypic and phenotypic modifications of Neisseria meningitidis after an accidental human passage

scientific article

Getting a grip on strangles: recent progress towards improved diagnostics and vaccines

scientific article published on 3 July 2006

High diversity of invasive Haemophilus influenzae isolates in France and the emergence of resistance to third generation cephalosporins by alteration of ftsI gene

scientific article published on 14 May 2019

Hospital effluent: A reservoir for carbapenemase-producing Enterobacterales?

scientific article published on 03 April 2019

Identification of three novel superantigen-encoding genes in Streptococcus equi subsp. zooepidemicus, szeF, szeN, and szeP.

scientific article

Identifying Neisseria species by use of the 50S ribosomal protein L6 (rplF) gene.

scientific article published on 12 February 2014

Implications of differential age distribution of disease-associated meningococcal lineages for vaccine development

scientific article

Integration of Genomic and Other Epidemiologic Data to Investigate and Control a Cross-Institutional Outbreak of Streptococcus pyogenes

scientific article

Internet-based sequence-typing databases for bacterial molecular epidemiology

scientific article published on January 2009

Introgression in the genus Campylobacter: generation and spread of mosaic alleles

scientific article published on 6 January 2011

Lack of Immunity in University Students before an Outbreak of Serogroup C Meningococcal Infection

article

Lineage-specific plasmid acquisition and the evolution of specialized pathogens in Bacillus thuringiensis and the Bacillus cereus group.

scientific article published on 6 March 2018

Local genes for local bacteria: Evidence of allopatry in the genomes of transatlantic Campylobacter populations.

scientific article published on 10 May 2017

Local genes for local bacteria: evidence of allopatry in the genomes of transatlantic Campylobacter populations

Long-term evolution of antigen repertoires among carried meningococci

scientific article published on 3 February 2010

MLST revisited: the gene-by-gene approach to bacterial genomics.

scientific article published on 2 September 2013

Molecular typing of meningococci: recommendations for target choice and nomenclature.

scientific article published on December 2006

Multi locus sequence typing of Chlamydia reveals an association between Chlamydia psittaci genotypes and host species.

scientific article

Multi-Locus Sequence Typing

scientific article published on 01 January 2001

Multicenter study for defining the breakpoint for rifampin resistance in Neisseria meningitidis by rpoB sequencing

scientific article

Multilocus sequence typing for global surveillance of meningococcal disease.

scientific article published on December 2006

Multilocus sequence typing of Clostridium difficile

scientific article

Multilocus sequence typing system for the endosymbiont Wolbachia pipientis.

scientific article

Multivalent liposome-based vaccines containing different serosubtypes of PorA protein induce cross-protective bactericidal immune responses against Neisseria meningitidis.

scientific article published on 2 August 2005

Naturally occurring isolates of Neisseria gonorrhoeae, which display anomalous serovar properties, express PIA/PIB hybrid porins, deletions in PIB or novel PIA molecules

scientific article published in May 1998

Neisseria adhesin A variation and revised nomenclature scheme

scientific article published on 7 May 2014

Neisseria genomics: current status and future perspectives.

scientific article published on 07 June 2017

Neisseria meningitidis serogroup X sequence type 767 in Turkey

scientific article published on 25 August 2010

Not all Pseudomonas aeruginosa are equal: strains from industrial sources possess uniquely large multireplicon genomes

scientific article published on 06 June 2019

Opa protein repertoires of disease-causing and carried meningococci

scientific article published on 28 May 2008

Opacity-associated adhesin repertoire in hyperinvasive Neisseria meningitidis

scientific article published on September 2006

Open-access bacterial population genomics: BIGSdb software, the PubMLST.org website and their applications

scientific article published on 24 September 2018

Phylogenetic Analysis of Invasive Serotype 1 Pneumococcus in South Africa, 1989 to 2013.

scientific article published on 9 March 2016

Population structure of Streptococcus oralis

scientific article (publication date: August 2009)

Population structure of the Yersinia pseudotuberculosis complex according to multilocus sequence typing

scientific article published on 27 September 2011

PorA variable regions of Neisseria meningitidis

scientific article published in April 2004

Potential Coverage of the 4CMenB Vaccine against Invasive Serogroup B Isolated from 2009 to 2013 in the Republic of Ireland ⬇️

article

Progressive genome-wide introgression in agricultural Campylobacter coli

scientific article published on 20 December 2012

PubMLST.org--The new home for the Borrelia MLSA database

scientific article published on 17 June 2015

Putatively novel serotypes and the potential for reduced vaccine effectiveness: capsular locus diversity revealed among 5405 pneumococcal genomes

scientific article published on October 2016

Real-time genomic epidemiological evaluation of human Campylobacter isolates by use of whole-genome multilocus sequence typing

scientific article published on 22 May 2013

Recombinant proteins in vaccine development.

scientific article

Recombination-Mediated Host Adaptation by Avian Staphylococcus aureus

scientific article

Recombinational switching of the Clostridium difficile S-layer and a novel glycosylation gene cluster revealed by large-scale whole-genome sequencing

scientific article published on 29 November 2012

Resolution of a Protracted Serogroup B Meningococcal Outbreak with Whole-Genome Sequencing Shows Interspecies Genetic Transfer

scientific article published on 14 September 2016

Resolution of a meningococcal disease outbreak from whole-genome sequence data with rapid Web-based analysis methods

scientific article

Ribosomal multilocus sequence typing: universal characterization of bacteria from domain to strain.

scientific article

Ribosomal proteins as biomarkers for bacterial identification by mass spectrometry in the clinical microbiology laboratory

scientific article

Role of selection in the emergence of lineages and the evolution of virulence in Neisseria meningitidis

scholarly article

Sequence data management for scientific purposes

scientific article published on 5 July 2017

Sequence type analysis and recombinational tests (START).

scientific article published in December 2001

Sequence variation of the SeM gene of Streptococcus equi allows discrimination of the source of strangles outbreaks

scientific article published in February 2006

Sequence, distribution and chromosomal context of class I and class II pilin genes of Neisseria meningitidis identified in whole genome sequences.

scientific article

Site-directed mutagenesis and halophilicity of dihydrolipoamide dehydrogenase from the halophilic archaeon, Haloferax volcanii

scientific article published in September 1997

Species status of Neisseria gonorrhoeae: evolutionary and epidemiological inferences from multilocus sequence typing.

scientific article

Target gene sequencing to characterize the penicillin G susceptibility of Neisseria meningitidis

scientific article published on 21 May 2007

Target gene sequencing to define the susceptibility of Neisseria meningitidis to ciprofloxacin

scientific article published on 28 January 2013

The Applied Development of a Tiered Multilocus Sequence Typing (MLST) Scheme for Dichelobacter nodosus

scientific article published on 23 March 2018

The Landscape of Realized Homologous Recombination in Pathogenic Bacteria.

scientific article published on 29 October 2015

The domestication of the probiotic bacterium Lactobacillus acidophilus.

scientific article

The effect of immune selection on the structure of the meningococcal opa protein repertoire

scientific article

The influence of mutation, recombination, population history, and selection on patterns of genetic diversity in Neisseria meningitidis

scientific article

TypOn: the microbial typing ontology

scientific article

Typing complex meningococcal vaccines to understand diversity and population structure of key vaccine antigens

scientific article published on 01 January 2018

Use of an improved atpA amplification and sequencing method to identify members of the Campylobacteraceae and Helicobacteraceae.

scientific article

Using multilocus sequence typing to study bacterial variation: prospects in the genomic era.

scientific article

Worth its salt

[Genotypic characteristics of Neisseria meningitidis serogroup W-135 strains isolated as the agent of fatal meningitis in a military hospital]

scientific article published on 01 July 2009

cgMLST characterisation of invasive Neisseria meningitidis serogroup C and W strains associated with increasing disease incidence in the Republic of Ireland.

scientific article

mlstdbNet - distributed multi-locus sequence typing (MLST) databases

scientific article

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