List of works - Shawn M. Gomez

A whole-body model for glycogen regulation reveals a critical role for substrate cycling in maintaining blood glucose homeostasis

scientific article

Analysis of sphingosine kinase activity in single natural killer cells from peripheral blood.

scientific article

Anopheles gambiae genome reannotation through synthesis of ab initio and comparative gene prediction algorithms

scientific article

Automated analysis of invadopodia dynamics in live cells.

scientific article published on July 2014

Capture of rare cells in suspension with antibody-coated polystyrene beads

scientific article published on 01 March 1999

Comparison of phylogenetic trees through alignment of embedded evolutionary distances

scientific article

Coral: Clear and Customizable Visualization of Human Kinome Data

scientific article published on 29 August 2018

Data-driven modeling of cellular stimulation, signaling and output response in RAW 264.7 cells

scientific article

Defining the expressed breast cancer kinome

scientific article published on 7 February 2012

Dissecting motility signaling through activation of specific Src-effector complexes

scientific article

Engineered kinase activation reveals unique morphodynamic phenotypes and associated trafficking for Src family isoforms.

scientific article published on 12 August 2014

Enhancing metabolomic data analysis with Progressive Consensus Alignment of NMR Spectra (PCANS)

scientific article

Erratum for Perkowski et al., "The EXIT Strategy: an Approach for Identifying Bacterial Proteins Exported during Host Infection".

scientific article published on 20 June 2017

Gleevec, an Abl family inhibitor, produces a profound change in cell shape and migration

scientific article

High-resolution quantification of focal adhesion spatiotemporal dynamics in living cells

scientific article published in 2011

Inhibition of Lapatinib-Induced Kinome Reprogramming in ERBB2-Positive Breast Cancer by Targeting BET Family Bromodomains

scientific article published on 9 April 2015

LKB1 loss in melanoma disrupts directional migration toward extracellular matrix cues.

scientific article

Learning to predict protein-protein interactions from protein sequences

scientific article

MAP3K4 Controls the Chromatin Modifier HDAC6 during Trophoblast Stem Cell Epithelial-to-Mesenchymal Transition

scientific article

Mapping protein interactions between Dengue virus and its human and insect hosts.

scientific article

Prediction of protein-protein interaction networks.

scientific article published in June 2008

Prevalent RNA recognition motif duplication in the human genome.

scientific article published on 25 March 2014

Proteomic analysis defines kinase taxonomies specific for subtypes of breast cancer.

scientific article

Recombination drives the evolution of mutational robustness

scientific article published on 02 January 2019

SAGE analysis of mosquito salivary gland transcriptomes during Plasmodium invasion

scientific article published on 18 October 2006

Spatiotemporal organization of exocytosis emerges during neuronal shape change.

scientific article published on 19 January 2018

Structural similarity-based predictions of protein interactions between HIV-1 and Homo sapiens.

scientific article published on 28 April 2010

The EXIT Strategy: an Approach for Identifying Bacterial Proteins Exported during Host Infection

scientific article

The Focal Adhesion Analysis Server: a web tool for analyzing focal adhesion dynamics.

scientific article published on 4 March 2013

The Genomic Sequence of the Accidental Pathogen Legionella pneumophila

scientific article

Transcriptome-wide identification and study of cancer-specific splicing events across multiple tumors.

scientific article published on March 2015

Two functionally distinct sources of actin monomers supply the leading edge of lamellipodia

scientific article published on 10 April 2015

Unexplored therapeutic opportunities in the human genome

scientific article published on 23 March 2018

Unexplored therapeutic opportunities in the human genome.

scientific article published on 23 February 2018

Visinets: a web-based pathway modeling and dynamic visualization tool

scientific article published on 28 May 2015

List of works by Shawn M. Gomez

A whole-body model for glycogen regulation reveals a critical role for substrate cycling in maintaining blood glucose homeostasis

Analysis of sphingosine kinase activity in single natural killer cells from peripheral blood.

Anopheles gambiae genome reannotation through synthesis of ab initio and comparative gene prediction algorithms

Automated analysis of invadopodia dynamics in live cells.

Capture of rare cells in suspension with antibody-coated polystyrene beads

Comparison of phylogenetic trees through alignment of embedded evolutionary distances

Coral: Clear and Customizable Visualization of Human Kinome Data

Data-driven modeling of cellular stimulation, signaling and output response in RAW 264.7 cells

Defining the expressed breast cancer kinome

Dissecting motility signaling through activation of specific Src-effector complexes

Engineered kinase activation reveals unique morphodynamic phenotypes and associated trafficking for Src family isoforms.

Enhancing metabolomic data analysis with Progressive Consensus Alignment of NMR Spectra (PCANS)

Erratum for Perkowski et al., "The EXIT Strategy: an Approach for Identifying Bacterial Proteins Exported during Host Infection".

Gleevec, an Abl family inhibitor, produces a profound change in cell shape and migration

High-resolution quantification of focal adhesion spatiotemporal dynamics in living cells

Inhibition of Lapatinib-Induced Kinome Reprogramming in ERBB2-Positive Breast Cancer by Targeting BET Family Bromodomains

LKB1 loss in melanoma disrupts directional migration toward extracellular matrix cues.

Learning to predict protein-protein interactions from protein sequences

MAP3K4 Controls the Chromatin Modifier HDAC6 during Trophoblast Stem Cell Epithelial-to-Mesenchymal Transition

Mapping protein interactions between Dengue virus and its human and insect hosts.

Prediction of protein-protein interaction networks.

Prevalent RNA recognition motif duplication in the human genome.

Proteomic analysis defines kinase taxonomies specific for subtypes of breast cancer.

Recombination drives the evolution of mutational robustness

SAGE analysis of mosquito salivary gland transcriptomes during Plasmodium invasion

Spatiotemporal organization of exocytosis emerges during neuronal shape change.

Structural similarity-based predictions of protein interactions between HIV-1 and Homo sapiens.

The EXIT Strategy: an Approach for Identifying Bacterial Proteins Exported during Host Infection

The Focal Adhesion Analysis Server: a web tool for analyzing focal adhesion dynamics.

The Genomic Sequence of the Accidental Pathogen Legionella pneumophila

Transcriptome-wide identification and study of cancer-specific splicing events across multiple tumors.

Two functionally distinct sources of actin monomers supply the leading edge of lamellipodia

Unexplored therapeutic opportunities in the human genome

Unexplored therapeutic opportunities in the human genome.

Visinets: a web-based pathway modeling and dynamic visualization tool