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List of works by Catia Pesquita

A Collection of Benchmark Data Sets for Knowledge Graph-based Similarity in the Biomedical Domain

scientific article published on 01 January 2020

AgreementMakerLight

scientific article published in 2023

AgreementMakerLight 2.0: Towards Efficient Large-Scale Ontology Matching

scientific article published in proceedings of the iswc 2014 posters & demonstrations track

Application of gene ontology to gene identification.

scientific article published on January 2011

Automatic background knowledge selection for matching biomedical ontologies

scientific article

BOLOS

Biomedical Knowledge Graph Embeddings with Negative Statements

scientific article published at ISWC 2023 research track.

Castanea root transcriptome in response to Phytophthora cinnamomi challenge

Chemical Entity Recognition and Resolution to ChEBI.

scientific article

Dynamic modularity in protein interaction networks predicts breast cancer outcome

scientific article

Evolving knowledge graph similarity for supervised learning in complex biomedical domains

scientific article published on 03 January 2020

Explaining protein–protein interactions with knowledge graph-based semantic similarity

scientific article published in March 2024

Identifying Gene Ontology Areas for Automated Enrichment

article

Identifying bioentity recognition errors of rule-based text-mining systems

Improving the interoperability of biomedical ontologies with compound alignments

scientific article published on 9 January 2018

Is there data leakage in protein-protein interaction prediction using knowledge graphs?

scientific article published in proceedings of the iswc 2021 posters, demos and industry tracks: from novel ideas to industrial practice

Measuring coherence between electronic and manual annotations in biological databases

Metrics for GO based protein semantic similarity: a systematic evaluation

scientific article

Mining GO annotations for improving annotation consistency

scientific article

Ontologies and Knowledge Graphs in Oncology Research

scientific article published on 10 April 2022

Ontology Alignment Repair through Modularization and Confidence-Based Heuristics

scientific article published on 28 December 2015

Ontology-Based Approach for Heterogeneity Analysis of EA Models

Pattern-Guided Association Rule Mining for Complex Ontology Alignment

scientific article published in proceedings of the iswc 2021 posters, demos and industry tracks: from novel ideas to industrial practice

Predicting the extension of biomedical ontologies

scientific article

Results for Matcha and Matcha-DL in OAEI 2023 ⬇️

scientific article published on 14 December 2023

Results of SemTab 2021 ⬇️

scientific article published on 9 March 2022

Results of the Ontology Alignment Evaluation Initiative 2023 ⬇️

scientific article published on 14 December 2023

Semantic Similarity in the Gene Ontology

scientific article published on January 2017

Semantic similarity in biomedical ontologies

scientific article

Supervised Biomedical Semantic Similarity

scientific article published in January 2023

Tackling the challenges of matching biomedical ontologies

scientific article published on 15 January 2018

The AgreementMakerLight Ontology Matching System

The epidemiology ontology: an ontology for the semantic annotation of epidemiological resources

scientific article published on 17 January 2014

The properties of property alignment on the semantic web

scientific article published in 2018

Towards Annotating Potential Incoherences in BioPortal Mappings

scientific article published at ISWC 2014

Towards Visualizing the Alignment of Large Biomedical Ontologies

scholarly article by Catia Pesquita et al published 2014 in Lecture Notes in Computer Science

Untangling BioOntologies for Mining Biomedical Information

User Validation in Ontology Alignment

scientific article published at ISWC 2016

User validation in ontology alignment: functional assessment and impact

scientific article published in 2019

VOWLMap: Graph-based Ontology Alignment Visualization and Editing ⬇️

scientific article published on 26 November 2021

VOWLMap: graph-based ontology alignment visualization and editing

scientific article published in proceedings of the iswc 2021 posters, demos and industry tracks: from novel ideas to industrial practice

What’s in a ‘nym’? Synonyms in Biomedical Ontology Matching

scientific article published at ISWC 2013

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