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List of works by Ronald Taylor

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Minimum information about a microarray experiment (MIAME)-toward standards for microarray data

scientific article (publication date: December 2001)
Genomic expansion of domain archaea highlights roles for organisms from new phyla in anaerobic carbon cycling.

scientific article
An overview of the Hadoop/MapReduce/HBase framework and its current applications in bioinformatics

scientific article
Standards for microarray data

scientific article
Minimum information specification for in situ hybridization and immunohistochemistry experiments (MISFISHIE)

scientific article
Submission of microarray data to public repositories

scientific article
The Toxoplasma gondii cyst wall protein CST1 is critical for cyst wall integrity and promotes bradyzoite persistence.

scientific article
The frameshift signal of HIV-1 involves a potential intramolecular triplex RNA structure

scientific article
Network inference algorithms elucidate Nrf2 regulation of mouse lung oxidative stress

scientific article
Bottlenecks and hubs in inferred networks are important for virulence in Salmonella typhimurium

scientific article published in February 2009
Reverse engineering adverse outcome pathways

scientific article published in January 2011
Microbial Community Metabolic Modeling: A Community Data-Driven Network Reconstruction

scientific article
Evidence supporting dissimilatory and assimilatory lignin degradation in Enterobacter lignolyticus SCF1.

scientific article published on 19 September 2013
The highly conserved MraZ protein is a transcriptional regulator in Escherichia coli

scientific article
GEST: a gene expression search tool based on a novel Bayesian similarity metric

scientific article published in January 2001
The underlying principles of scientific publication.

scientific article published in November 2002
Changes in translational efficiency is a dominant regulatory mechanism in the environmental response of bacteria.

scientific article published on 30 September 2013
Data standards for Omics data: the basis of data sharing and reuse

scientific article (publication date: 2011)
Transcriptomic and proteomic dynamics in the metabolism of a diazotrophic cyanobacterium, Cyanothece sp. PCC 7822 during a diurnal light-dark cycle

scientific article
Distinct strains of Toxoplasma gondii feature divergent transcriptomes regardless of developmental stage

scientific article
Gene set analyses for interpreting microarray experiments on prokaryotic organisms

scientific article
DNA correlations

scientific article published on 01 December 1992
Development of the Minimum Information Specification for In Situ Hybridization and Immunohistochemistry Experiments (MISFISHIE).

scientific article published on January 2006
SEBINI: Software Environment for BIological Network Inference

scientific article published on 5 September 2006
An open letter on microarray data from the MGED Society

scientific article published on November 2004
Network analysis of transcriptomics expands regulatory landscapes in Synechococcus sp. PCC 7002.

scientific article published on 27 August 2016
A guide to microarray experiments-an open letter to the scientific journals

scientific article published in The Lancet
Coregulation of Terpenoid Pathway Genes and Prediction of Isoprene Production in Bacillus subtilis Using Transcriptomics

scientific article
Identification of Differential Gene Expression Patterns after Acute Exposure to High and Low Doses of Low-LET Ionizing Radiation in a Reconstituted Human Skin Tissue

scientific article published on November 2016
Cells Respond to Distinct Nanoparticle Properties with Multiple Strategies As Revealed by Single-Cell RNA-Seq.

scientific article published on 27 October 2016
CO2 exposure at pressure impacts metabolism and stress responses in the model sulfate-reducing bacterium Desulfovibrio vulgaris strain Hildenborough.

scientific article
Predicting Species-Resolved Macronutrient Acquisition during Succession in a Model Phototrophic Biofilm Using an Integrated 'Omics Approach

scientific article
Using the gene ontology to enrich biological pathways.

scientific article published on 10 December 2009
Brain in situ hybridization maps as a source for reverse-engineering transcriptional regulatory networks: Alzheimer's disease insights

scientific article published on 3 April 2016
Computing and Applying Atomic Regulons to Understand Gene Expression and Regulation

scientific article
A network inference workflow applied to virulence-related processes in Salmonella typhimurium

scientific article published in March 2009
PACAP interactions in the mouse brain: implications for behavioral and other disorders.

scientific article
Enriching regulatory networks by bootstrap learning using optimised GO-based gene similarity and gene links mined from PubMed abstracts

scientific article published on 17 February 2011
Reconstruction of the Regulatory Network for Bacillus subtilis and Reconciliation with Gene Expression Data

scientific article published on March 18, 2016
An analysis pipeline for the inference of protein-protein interaction networks

scientific article published in January 2009
Modeling dynamic regulatory processes in stroke

scientific article
Biological Network Inference and analysis using SEBINI and CABIN.

scientific article published on January 2009
Modeling framework for isotopic labeling of heteronuclear moieties

scientific article published on 04 March 2017
An integrated approach to predictive genomic analytics

scientific article published in 2010
Cover Image, Volume 231, Number 11, November 2016.

scientific article published on November 2016
Learning biological networks via bootstrapping with optimized go-based gene similarity

scientific article published in 2010

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