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List of works by Ralf Bundschuh

A model of pulldown alignments from SssI-treated DNA improves DNA methylation prediction

scientific article published on 19 August 2019

A performance enhanced PSI-BLAST based on hybrid alignment

scientific article

A practical approach to significance assessment in alignment with gaps.

scientific article published in March 2006

A puzzle in DNA biophysics.

scientific article

A quantitative model of nucleosome dynamics.

scientific article

A structured viroid RNA serves as a substrate for dicer-like cleavage to produce biologically active small RNAs but is resistant to RNA-induced silencing complex-mediated degradation.

scientific article published on 3 January 2007

Analytical description of finite size effects for RNA secondary structures

scientific article published on 9 June 2004

Anomalous scaling in nanopore translocation of structured heteropolymers

scientific article

Asymmetric exclusion process and extremal statistics of random sequences

scientific article published on 5 March 2002

CLEAR: coverage-based limiting-cell experiment analysis for RNA-seq

scientific article published on 10 February 2020

Comment on "Simplest Possible Self-Organized Critical System"

scientific article published on 01 November 1996

Comparison of insertional RNA editing in Myxomycetes

scientific article

Computational approaches to insertional RNA editing

scientific article published in January 2007

Computational prediction of RNA editing sites

scientific article published in July 2004

Contribution of ribosomal residues to P-site tRNA binding

scientific article published on 05 May 2009

Correlation of Klebsiella pneumoniae comparative genetic analyses with virulence profiles in a murine respiratory disease model

scientific article

Coupled dynamics of RNA folding and nanopore translocation

scientific article published on 10 November 2005

DNA sequence influences hexasome orientation to regulate DNA accessibility.

scientific article published in June 2019

Delocalization transitions of semiflexible manifolds

scientific article published on 17 June 2002

Directed polymers in high dimensions

scientific article published on 01 July 1996

Distant homology detection using a LEngth and STructure-based sequence Alignment Tool (LESTAT).

scientific article

Effects of long-range correlations in DNA on sequence alignment score statistics.

scientific article published on June 2007

Epigenetics meets genetics in acute myeloid leukemia: clinical impact of a novel seven-gene score

scientific article published on 30 December 2013

Eμ-TCL1xMyc: A Novel Mouse Model for Concurrent CLL and B-Cell Lymphoma

scientific article published on 11 July 2019

Finite width model sequence comparison

scientific article published on 17 August 2004

Formation of the open complex by bacterial RNA polymerase--a quantitative model

scientific article (publication date: June 2008)

Genome annotation in the presence of insertional RNA editing.

scientific article published on 25 September 2008

Genome-wide methylation profiling in decitabine-treated patients with acute myeloid leukemia

scientific article

Global analysis of protein synthesis in Flavobacterium johnsoniae reveals the use of Kozak-like sequences in diverse bacteria

scientific article published on 01 November 2019

Host Double Strand Break Repair Generates HIV-1 Strains Resistant to CRISPR/Cas9.

scientific article published on 12 July 2016

Inhibition of cytoplasmic cap methylation identifies 5' TOP mRNAs as recapping targets and reveals recapping sites downstream of native 5' ends

scientific article published on 01 April 2020

Interplay between single-stranded binding proteins on RNA secondary structure.

scientific article

Large scale genotype-phenotype correlation analysis based on phylogenetic trees

scientific article published on 31 January 2007

Melting of branched RNA molecules

scientific article published on 7 April 2008

Methyl-CpG/MBD2 Interaction Requires Minimum Separation and Exhibits Minimal Sequence Specificity.

scientific article published on December 2016

Model for codon position bias in RNA editing

article by Tsunglin Liu & Ralf Bundschuh published 18 August 2005 in Physical Review Letters

Model for folding and aggregation in RNA secondary structures

scientific article published on 12 January 2006

Modeling DNA unzipping in the presence of bound proteins

scientific article published on 14 September 2005

Modeling the interplay of single-stranded binding proteins and nucleic acid secondary structure

scientific article published on 4 November 2009

MutS homolog sliding clamps shield the DNA from binding proteins

scientific article published on 02 August 2018

Numerical method for accessing the universal scaling function for a multiparticle discrete time asymmetric exclusion process

scientific article published on 07 November 2005

PrEMeR-CG: inferring nucleotide level DNA methylation values from MethylCap-seq data

scientific article

Quantification of the differences between quenched and annealed averaging for RNA secondary structures

scientific article published on 12 December 2005

Quantitative models for accelerated protein dissociation from nucleosomal DNA.

scientific article

RNA structure generates natural cooperativity between single-stranded RNA binding proteins targeting 5' and 3'UTRs.

scientific article

Rapid significance estimation in local sequence alignment with gaps

scientific article published in January 2002

RiboProP: A Probabilistic Ribosome Positioning Algorithm for Ribosome Profiling

article

SIB-BLAST: a web server for improved delineation of true and false positives in PSI-BLAST searches

scientific article published on 8 May 2009

Simple is beautiful: a straightforward approach to improve the delineation of true and false positives in PSI-BLAST searches

scientific article published on 10 April 2008

Small RNAs in tomato fruit and leaf development.

scientific article

Statistical mechanics of secondary structures formed by random RNA sequences.

scientific article published on 11 February 2002

Systematic investigation of insertional and deletional RNA-DNA differences in the human transcriptome

scientific article

The conserved GTPase LepA contributes mainly to translation initiation in Escherichia coli.

scientific article

The flexibility of locally melted DNA

scientific article published on 31 May 2009

The role of annealing and fragmentation in human tau aggregation dynamics

scientific article published on 11 February 2019

The role of dimerization in noise reduction of simple genetic networks

scientific article published in January 2003

Translocation of structured polynucleotides through nanopores

scientific article published in June 2004

Unified approach to partition functions of RNA secondary structures.

scientific article published in November 2013

Zebrafish rbm8a and magoh mutants reveal EJC developmental functions and new 3'UTR intron-containing NMD targets

scientific article published on 05 June 2020

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