List of works - Omry Koren

90. Fecal Microbiota Transplantation in Metastatic Melanoma Patients Resistant to Anti-PD-1 Treatment

scholarly article by Ilan Youngster et al published 23 October 2019 in Open Forum Infectious Diseases

A framework for human microbiome research

scientific article

A guide to enterotypes across the human body: meta-analysis of microbial community structures in human microbiome datasets

scientific article

AIEC pathobiont instigates chronic colitis in susceptible hosts by altering microbiota composition

scientific article

Alterations in the Gut (Gallus gallus) Microbiota Following the Consumption of Zinc Biofortified Wheat (Triticum aestivum)-Based Diet

scientific article published on 15 June 2018

Alterations in the Gut Microbiome in the Progression of Cirrhosis to Hepatocellular Carcinoma

scientific article published on 16 June 2020

Alterations in the Intestinal Morphology, Gut Microbiota, and Trace Mineral Status Following Intra-Amniotic Administration (Gallus gallus) of Teff (Eragrostis tef) Seed Extracts

scientific article published on 02 October 2020

Alterations of the salivary and fecal microbiome in patients with primary sclerosing cholangitis

scientific article published on 19 September 2020

Analysis of gut microbial regulation of host gene expression along the length of the gut and regulation of gut microbial ecology through MyD88.

scientific article

Antibiotic use during pregnancy: how bad is it?

scientific article published on 17 June 2016

Antibiotics in early life: dysbiosis and the damage done

scientific article published on 01 July 2018

Bacteria associated with mucus and tissues of the coral Oculina patagonica in summer and winter

scientific article published in August 2006

Bacteria associated with the bleached and cave coral Oculina patagonica

scientific article

Branched chain fatty acids reduce the incidence of necrotizing enterocolitis and alter gastrointestinal microbial ecology in a neonatal rat model

scientific article

Characterization of <i>Clostridioides difficile</i> Strains, the Disease Severity, and the Microbial Changes They Induce

scientific article published on 18 December 2020

Characterizing the gut (Gallus gallus) microbiota following the consumption of an iron biofortified Rwandan cream seeded carioca (Phaseolus Vulgaris L.) bean-based diet

scientific article published on 10 August 2017

Chronic Zinc Deficiency Alters Chick Gut Microbiota Composition and Function

scientific article

Colitis in TLR5-deficiency Mice: Role of the Microbiota

Conducting a microbiome study

scientific article

Deep microbial analysis of multiple placentas shows no evidence for a placental microbiome

scientific article published on 24 August 2019

Dietary emulsifiers impact the mouse gut microbiota promoting colitis and metabolic syndrome

scientific article published on 25 February 2015

Direct sequencing of the human microbiome readily reveals community differences

scientific article

Diversity and heritability of the maize rhizosphere microbiome under field conditions

scientific article published on April 2013

Dysbiosis of Skin Microbiota in Psoriatic Patients: Co-occurrence of Fungal and Bacterial Communities

scientific article published in 2019

Dysbiosis of microbiome and probiotic treatment in a genetic model of autism spectrum disorders

scientific article published on 19 May 2018

Effects of Diet-Modulated Autologous Fecal Microbiota Transplantation on Weight Regain

scientific article published on 26 August 2020

Erratum: Corrigendum: Dietary emulsifiers impact the mouse gut microbiota promoting colitis and metabolic syndrome

scientific article published in Nature

Fecal microbiota transplant promotes response in immunotherapy-refractory melanoma patients

scientific article published on 10 December 2020

First trimester biomarkers for prediction of gestational diabetes mellitus

scientific article published on 06 September 2020

Gut microbiota determines the social behavior of mice and induces metabolic and inflammatory changes in their adipose tissue

scientific article published on 19 March 2021

Helminth-Based Product and the Microbiome of Mice with Lupus

Host remodeling of the gut microbiome and metabolic changes during pregnancy

scientific article

How holobionts get sick-toward a unifying scheme of disease

scientific article published on 24 June 2017

Human genetics shape the gut microbiome.

scientific article

Human oral, gut, and plaque microbiota in patients with atherosclerosis

scientific article

Impact of training sets on classification of high-throughput bacterial 16s rRNA gene surveys

scientific article

In Vitro Activity of Tedizolid, Dalbavancin, and Ceftobiprole Against Clostridium difficile.

scientific article published on 11 June 2018

In utero human intestine harbors unique metabolomic features including bacterial metabolites

scientific article published on 01 October 2020

Interactions between the Gut Microbiome and Mucosal Immunoglobulins A, M, and G in the Developing Infant Gut

scientific article published on 26 November 2019

Interleukin 1α-Deficient Mice Have an Altered Gut Microbiota Leading to Protection from Dextran Sodium Sulfate-Induced Colitis.

scientific article

Interleukin-1β (IL-1β) promotes susceptibility of Toll-like receptor 5 (TLR5) deficient mice to colitis.

scientific article published on 5 June 2011

Iron Biofortified Carioca Bean ( L.)-Based Brazilian Diet Delivers More Absorbable Iron and Affects the Gut Microbiota In Vivo ()

article

Large-scale replicated field study of maize rhizosphere identifies heritable microbes.

scientific article published on 25 June 2018

Low-dose penicillin in early life induces long-term changes in murine gut microbiota, brain cytokines and behavior

scientific article published on 04 April 2017

Microbial Changes during Pregnancy, Birth, and Infancy

scientific article

Microbial endocrinology: the interplay between the microbiota and the endocrine system

scientific article

Microbial signature in IgE-mediated food allergies

scientific article published on 27 October 2020

Microbiota at the crossroads of autoimmunity

scientific article

Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications

scientific article

Modulation of cytokine patterns and microbiome during pregnancy in IBD

scientific article published on 05 June 2019

Molecular (Me)micry?

scientific article published on 01 May 2018

Moody microbes: Do Microbes Influence our Behavior?

Mother-to-Infant Microbial Transmission from Different Body Sites Shapes the Developing Infant Gut Microbiome

article

Neonatal antibiotic exposure impairs child growth during the first six years of life by perturbing intestinal microbial colonization

scientific article

Nicotianamine-chelated iron positively affects iron status, intestinal morphology and microbial populations in vivo (Gallus gallus)

scientific article published on 10 February 2020

Novelties in the field of autoimmunity - 1st Saint Petersburg congress of autoimmunity, the bridge between east and west

scientific article

Ontogeny of the B Cell Receptor Repertoire and Microbiome in Mice

scientific article published in 2022

Patterns of salivary microbiota injury and oral mucositis in recipients of allogeneic hematopoietic stem cell transplantation

scientific article published on 01 July 2020

Persistent shifts in Caribbean coral microbiota are linked to the 2010 warm thermal anomaly

scientific article published on 6 April 2015

Petroleum Bioremediation in Seawater Using Guano as the Fertilizer

Petroleum pollution bioremediation using water-insoluble uric acid as the nitrogen source

scientific article

Prenatal low-dose penicillin results in long-term sex-specific changes to murine behaviour, immune regulation, and gut microbiota

scientific article published on 27 November 2019

Progesterone Increases Bifidobacterium Relative Abundance during Late Pregnancy

scientific article published on 01 April 2019

Psoriatic patients have a distinct structural and functional fecal microbiota compared with controls

scientific article published on 29 May 2019

Publisher Correction: Sex dependent effects of post-natal penicillin on brain, behavior and immune regulation are prevented by concurrent probiotic treatment

scientific article published on 22 October 2020

Questioning the fetal microbiome illustrates pitfalls of low-biomass microbial studies

scientific article published in 2023

Radiation induces proinflammatory dysbiosis: transmission of inflammatory susceptibility by host cytokine induction.

scientific article

Reprogrammed and transmissible intestinal microbiota confer diminished susceptibility to induced colitis in TMF-/- mice

scientific article

Responses of gut microbiota to diet composition and weight loss in lean and obese mice

scientific article published on 19 May 2011

Sex dependent effects of post-natal penicillin on brain, behavior and immune regulation are prevented by concurrent probiotic treatment

scientific article published on 25 June 2020

Social-Stress-Responsive Microbiota Induces Stimulation of Self-Reactive Effector T Helper Cells

scientific article published on 14 May 2019

Structure, function and diversity of the healthy human microbiome

scientific article

Supervised classification of microbiota mitigates mislabeling errors

scientific article

The Era of Fecal Microbiota Transplantation.

scientific article published in August 2015

The Human Intestinal Microbiota and Microbiome

The Pregnancy Microbiome

scientific article published on 27 March 2017

The aging mouse microbiome has obesogenic characteristics

scientific article published on 12 October 2020

The antibacterial lectin RegIIIgamma promotes the spatial segregation of microbiota and host in the intestine

scientific article

The coral probiotic hypothesis

scientific article

The effects of antipsychotic medications on microbiome and weight gain in children and adolescents.

scientific article published on 19 June 2019

The gut microbiota: a possible factor influencing systemic lupus erythematosus

scientific article published on April 2017

The hologenome theory disregards the coral holobiont: reply from Rosenberg et al

scientific article published in 2007

The human gut and groundwater harbor non-photosynthetic bacteria belonging to a new candidate phylum sibling to Cyanobacteria

scientific article

The intestinal microbiome, weight, and metabolic changes in women treated by adjuvant chemotherapy for breast and gynecological malignancies

scientific article published on 21 October 2020

The role of microorganisms in coral health, disease and evolution

scientific article

The “Minimum Information about an ENvironmental Sequence” (MIENS) specification

Transient inability to manage proteobacteria promotes chronic gut inflammation in TLR5-deficient mice

scientific article

Tu2024 AIEC Instigates Chronic Colitis by Altering Microbiota Composition and Its Inherent Pro-Inflammatory Potential

article

Tuftsin-Phosphorylcholine Maintains Normal Gut Microbiota in Collagen Induced Arthritic Mice

scientific article published on 10 July 2017

Unravelling the effects of the environment and host genotype on the gut microbiome ⬇️

scientific article published on April 1, 2011

Vibrios in Coral Health and Disease

article

List of works by Omry Koren

90. Fecal Microbiota Transplantation in Metastatic Melanoma Patients Resistant to Anti-PD-1 Treatment

A framework for human microbiome research

A guide to enterotypes across the human body: meta-analysis of microbial community structures in human microbiome datasets

AIEC pathobiont instigates chronic colitis in susceptible hosts by altering microbiota composition

Alterations in the Gut (Gallus gallus) Microbiota Following the Consumption of Zinc Biofortified Wheat (Triticum aestivum)-Based Diet

Alterations in the Gut Microbiome in the Progression of Cirrhosis to Hepatocellular Carcinoma

Alterations in the Intestinal Morphology, Gut Microbiota, and Trace Mineral Status Following Intra-Amniotic Administration (Gallus gallus) of Teff (Eragrostis tef) Seed Extracts

Alterations of the salivary and fecal microbiome in patients with primary sclerosing cholangitis

Analysis of gut microbial regulation of host gene expression along the length of the gut and regulation of gut microbial ecology through MyD88.

Antibiotic use during pregnancy: how bad is it?

Antibiotics in early life: dysbiosis and the damage done

Bacteria associated with mucus and tissues of the coral Oculina patagonica in summer and winter

Bacteria associated with the bleached and cave coral Oculina patagonica

Branched chain fatty acids reduce the incidence of necrotizing enterocolitis and alter gastrointestinal microbial ecology in a neonatal rat model

Characterization of <i>Clostridioides difficile</i> Strains, the Disease Severity, and the Microbial Changes They Induce

Characterizing the gut (Gallus gallus) microbiota following the consumption of an iron biofortified Rwandan cream seeded carioca (Phaseolus Vulgaris L.) bean-based diet

Chronic Zinc Deficiency Alters Chick Gut Microbiota Composition and Function

Colitis in TLR5-deficiency Mice: Role of the Microbiota

Conducting a microbiome study

Deep microbial analysis of multiple placentas shows no evidence for a placental microbiome

Dietary emulsifiers impact the mouse gut microbiota promoting colitis and metabolic syndrome

Direct sequencing of the human microbiome readily reveals community differences

Diversity and heritability of the maize rhizosphere microbiome under field conditions

Dysbiosis of Skin Microbiota in Psoriatic Patients: Co-occurrence of Fungal and Bacterial Communities

Dysbiosis of microbiome and probiotic treatment in a genetic model of autism spectrum disorders

Effects of Diet-Modulated Autologous Fecal Microbiota Transplantation on Weight Regain

Erratum: Corrigendum: Dietary emulsifiers impact the mouse gut microbiota promoting colitis and metabolic syndrome

Fecal microbiota transplant promotes response in immunotherapy-refractory melanoma patients

First trimester biomarkers for prediction of gestational diabetes mellitus

Gut microbiota determines the social behavior of mice and induces metabolic and inflammatory changes in their adipose tissue

Helminth-Based Product and the Microbiome of Mice with Lupus

Host remodeling of the gut microbiome and metabolic changes during pregnancy

How holobionts get sick-toward a unifying scheme of disease

Human genetics shape the gut microbiome.

Human oral, gut, and plaque microbiota in patients with atherosclerosis

Impact of training sets on classification of high-throughput bacterial 16s rRNA gene surveys

In Vitro Activity of Tedizolid, Dalbavancin, and Ceftobiprole Against Clostridium difficile.

In utero human intestine harbors unique metabolomic features including bacterial metabolites

Interactions between the Gut Microbiome and Mucosal Immunoglobulins A, M, and G in the Developing Infant Gut

Interleukin 1α-Deficient Mice Have an Altered Gut Microbiota Leading to Protection from Dextran Sodium Sulfate-Induced Colitis.

Interleukin-1β (IL-1β) promotes susceptibility of Toll-like receptor 5 (TLR5) deficient mice to colitis.

Iron Biofortified Carioca Bean ( L.)-Based Brazilian Diet Delivers More Absorbable Iron and Affects the Gut Microbiota In Vivo ()

Large-scale replicated field study of maize rhizosphere identifies heritable microbes.

Low-dose penicillin in early life induces long-term changes in murine gut microbiota, brain cytokines and behavior

Microbial Changes during Pregnancy, Birth, and Infancy

Microbial endocrinology: the interplay between the microbiota and the endocrine system

Microbial signature in IgE-mediated food allergies

Microbiota at the crossroads of autoimmunity

Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications

Modulation of cytokine patterns and microbiome during pregnancy in IBD

Molecular (Me)micry?

Moody microbes: Do Microbes Influence our Behavior?

Mother-to-Infant Microbial Transmission from Different Body Sites Shapes the Developing Infant Gut Microbiome

Neonatal antibiotic exposure impairs child growth during the first six years of life by perturbing intestinal microbial colonization

Nicotianamine-chelated iron positively affects iron status, intestinal morphology and microbial populations in vivo (Gallus gallus)

Novelties in the field of autoimmunity - 1st Saint Petersburg congress of autoimmunity, the bridge between east and west

Ontogeny of the B Cell Receptor Repertoire and Microbiome in Mice

Patterns of salivary microbiota injury and oral mucositis in recipients of allogeneic hematopoietic stem cell transplantation

Persistent shifts in Caribbean coral microbiota are linked to the 2010 warm thermal anomaly

Petroleum Bioremediation in Seawater Using Guano as the Fertilizer

Petroleum pollution bioremediation using water-insoluble uric acid as the nitrogen source

Prenatal low-dose penicillin results in long-term sex-specific changes to murine behaviour, immune regulation, and gut microbiota

Progesterone Increases Bifidobacterium Relative Abundance during Late Pregnancy

Psoriatic patients have a distinct structural and functional fecal microbiota compared with controls

Publisher Correction: Sex dependent effects of post-natal penicillin on brain, behavior and immune regulation are prevented by concurrent probiotic treatment

Questioning the fetal microbiome illustrates pitfalls of low-biomass microbial studies

Radiation induces proinflammatory dysbiosis: transmission of inflammatory susceptibility by host cytokine induction.

Reprogrammed and transmissible intestinal microbiota confer diminished susceptibility to induced colitis in TMF-/- mice

Responses of gut microbiota to diet composition and weight loss in lean and obese mice

Sex dependent effects of post-natal penicillin on brain, behavior and immune regulation are prevented by concurrent probiotic treatment

Social-Stress-Responsive Microbiota Induces Stimulation of Self-Reactive Effector T Helper Cells

Structure, function and diversity of the healthy human microbiome

Supervised classification of microbiota mitigates mislabeling errors

The Era of Fecal Microbiota Transplantation.

The Human Intestinal Microbiota and Microbiome

The Pregnancy Microbiome

The aging mouse microbiome has obesogenic characteristics

The antibacterial lectin RegIIIgamma promotes the spatial segregation of microbiota and host in the intestine

The coral probiotic hypothesis