List of works - Ulrich Stelzl

A Y2H-seq approach defines the human protein methyltransferase interactome

scientific article

A computational framework for boosting confidence in high-throughput protein-protein interaction datasets

scientific article

A directed protein interaction network for investigating intracellular signal transduction

scientific article

A functionally defined high-density NRF2 interactome reveals new conditional regulators of ARE transactivation

scientific article published on 20 August 2020

A human kinase yeast array for the identification of kinases modulating phosphorylation-dependent protein-protein interactions

scientific article published on 01 March 2022

A human protein-protein interaction network: a resource for annotating the proteome

scientific article

A new role for FBP21 as regulator of Brr2 helicase activity

scientific article published on July 2017

A noncanonical PWI domain in the N-terminal helicase-associated region of the spliceosomal Brr2 protein

scientific article

A protein interaction network links GIT1, an enhancer of huntingtin aggregation, to Huntington's disease

scientific article

A short fragment of 23S rRNA containing the binding sites for two ribosomal proteins, L24 and L4, is a key element for rRNA folding during early assembly

scientific article published on April 2001

A stringent yeast two-hybrid matrix screening approach for protein-protein interaction discovery

scientific article published in January 2012

Active zone scaffolds differentially accumulate Unc13 isoforms to tune Ca(2+) channel-vesicle coupling

scientific article

Adhesion and degranulation promoting adapter protein (ADAP) is a central hub for phosphotyrosine-mediated interactions in T cells

scientific article published on 22 July 2010

Advancing Biomarker Development Through Convergent Engagement: Summary Report of the 2nd International Danube Symposium on Biomarker Development, Molecular Imaging and Applied Diagnostics; March 14–16, 2018; Vienna, Austria

article

An empirical framework for binary interactome mapping

scientific article

Bioinformatics Analysis of PTM-Modified Protein Interaction Networks and Complexes

scientific article published in January 2017

Characterization of RNA-protein interactions by phosphorothioate footprinting and its applications to the ribosome

scientific article published in January 2008

Cluster-based assessment of protein-protein interaction confidence

scientific article

Defining Human Tyrosine Kinase Phosphorylation Networks Using Yeast as an In Vivo Model Substrate.

scientific article published on August 2017

Detection of alpha-rod protein repeats using a neural network and application to huntingtin.

scientific article

Domain-specific characteristics of the bifunctional key enzyme of sialic acid biosynthesis, UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase

scientific journal article

Dual coordination of post translational modifications in human protein networks

scientific article

Dynamic protein-protein interaction wiring of the human spliceosome

scientific article

E. coli network upgrade

scientific article published in March 2014

Feedback inhibition of cAMP effector signaling by a chaperone-assisted ubiquitin system.

scientific article published on 12 June 2019

Gpr161 anchoring of PKA consolidates GPCR and cAMP signaling

scientific article published on 28 June 2016

Huntingtin interacts with the receptor sorting family protein GASP2.

scientific article

Identification and characterization of BATF3 as a context-specific coactivator of the glucocorticoid receptor

scientific article published on 14 July 2017

Identification of VCP/p97, carboxyl terminus of Hsp70-interacting protein (CHIP), and amphiphysin II interaction partners using membrane-based human proteome arrays

scientific article

In vitro selection of random RNA fragments to identify protein-binding sites within large RNAs.

scientific article

IntScore: a web tool for confidence scoring of biological interactions

scientific article published on 30 May 2012

Interaction modulation through arrays of clustered methyl-arginine protein modifications

scientific article published on 21 September 2018

Interactome mapping suggests new mechanistic details underlying Alzheimer's disease

scientific article

Large-scale de novo prediction of physical protein-protein association ⬇️

scientific article

Molecular interaction networks in the analyses of sequence variation and proteomics data

scientific article

Multiple protein-protein interactions converging on the Prp38 protein during activation of the human spliceosome

scientific article published on 16 December 2015

Near-atomic structures of the BBSome reveal the basis for BBSome activation and binding to GPCR cargoes

scientific article published on 08 June 2020

Novel autophosphorylation sites of Src family kinases regulate kinase activity and SH2 domain-binding capacity

scientific journal article

Phospho-tyrosine dependent protein-protein interaction network

scientific article

Phosphorylation of the Bruchpilot N-terminus in Drosophila unlocks axonal transport of active zone building blocks

scientific article published on 18 March 2019

Phosphorylation-regulated axonal dependent transport of syntaxin 1 is mediated by a Kinesin-1 adapter.

scientific article published on 26 March 2012

Protein interaction perturbation profiling at amino-acid resolution

scientific article published on 16 October 2017

Protein synthesis at atomic resolution: mechanistics of translation in the light of highly resolved structures for the ribosome.

scientific article

RIM-binding protein couples synaptic vesicle recruitment to release sites

scientific article published on 01 July 2020

RNA-protein interactions in ribosomes: in vitro selection from randomly fragmented rRNA.

scientific article published in January 2000

RNA-structural mimicry in Escherichia coli ribosomal protein L4-dependent regulation of the S10 operon

scientific article

Repeated two-hybrid screening detects transient protein–protein interactions

Ribosomal protein L2 is involved in the association of the ribosomal subunits, tRNA binding to A and P sites and peptidyl transfer ⬇️

scientific article

SERF: in vitro election of random RNA fragments to identify protein binding sites within large RNAs

scientific article published in November 2001

Selecting rRNA binding sites for the ribosomal proteins L4 and L6 from randomly fragmented rRNA: application of a method called SERF

scholarly article

Studying post-translational modifications with protein interaction networks

scientific article published on 21 December 2013

Systematic Protein-Protein Interaction Analysis Reveals Intersubcomplex Contacts in the Nuclear Pore Complex

scientific article

T cell response in Shigella-induced reactive arthritis.

scientific article published on 24 February 2004

The ConsensusPathDB interaction database: 2013 update

scientific article

The Molecular Architecture of Native BBSome Obtained by an Integrated Structural Approach

scientific article published on 11 July 2019

The collapsin response mediator protein 1 (CRMP-1) and the promyelocytic leukemia zinc finger protein (PLZF) bind to UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase (GNE), the key enzyme of sialic acid biosynthesis

scientific article

The tetracycline resistance protein Tet(o) perturbs the conformation of the ribosomal decoding centre

scientific article published in September 2002

The value of high quality protein-protein interaction networks for systems biology

scientific article

Understanding Disease Variants through the Lens of Protein Interactions

scientific article

[19] Preparation of functional ribosomal complexes and effect of buffer conditions on tRNA positions observed by cryoelectron microscopy

scientific article published on 01 January 2000

List of works by Ulrich Stelzl

A Y2H-seq approach defines the human protein methyltransferase interactome

A computational framework for boosting confidence in high-throughput protein-protein interaction datasets

A directed protein interaction network for investigating intracellular signal transduction

A functionally defined high-density NRF2 interactome reveals new conditional regulators of ARE transactivation

A human kinase yeast array for the identification of kinases modulating phosphorylation-dependent protein-protein interactions

A human protein-protein interaction network: a resource for annotating the proteome

A new role for FBP21 as regulator of Brr2 helicase activity

A noncanonical PWI domain in the N-terminal helicase-associated region of the spliceosomal Brr2 protein

A protein interaction network links GIT1, an enhancer of huntingtin aggregation, to Huntington's disease

A short fragment of 23S rRNA containing the binding sites for two ribosomal proteins, L24 and L4, is a key element for rRNA folding during early assembly

A stringent yeast two-hybrid matrix screening approach for protein-protein interaction discovery

Active zone scaffolds differentially accumulate Unc13 isoforms to tune Ca(2+) channel-vesicle coupling

Adhesion and degranulation promoting adapter protein (ADAP) is a central hub for phosphotyrosine-mediated interactions in T cells

Advancing Biomarker Development Through Convergent Engagement: Summary Report of the 2nd International Danube Symposium on Biomarker Development, Molecular Imaging and Applied Diagnostics; March 14–16, 2018; Vienna, Austria

An empirical framework for binary interactome mapping

Bioinformatics Analysis of PTM-Modified Protein Interaction Networks and Complexes

Characterization of RNA-protein interactions by phosphorothioate footprinting and its applications to the ribosome

Cluster-based assessment of protein-protein interaction confidence

Defining Human Tyrosine Kinase Phosphorylation Networks Using Yeast as an In Vivo Model Substrate.

Detection of alpha-rod protein repeats using a neural network and application to huntingtin.

Domain-specific characteristics of the bifunctional key enzyme of sialic acid biosynthesis, UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase

Dual coordination of post translational modifications in human protein networks

Dynamic protein-protein interaction wiring of the human spliceosome

E. coli network upgrade

Feedback inhibition of cAMP effector signaling by a chaperone-assisted ubiquitin system.

Gpr161 anchoring of PKA consolidates GPCR and cAMP signaling

Huntingtin interacts with the receptor sorting family protein GASP2.

Identification and characterization of BATF3 as a context-specific coactivator of the glucocorticoid receptor

Identification of VCP/p97, carboxyl terminus of Hsp70-interacting protein (CHIP), and amphiphysin II interaction partners using membrane-based human proteome arrays

In vitro selection of random RNA fragments to identify protein-binding sites within large RNAs.

IntScore: a web tool for confidence scoring of biological interactions

Interaction modulation through arrays of clustered methyl-arginine protein modifications

Interactome mapping suggests new mechanistic details underlying Alzheimer's disease

Large-scale de novo prediction of physical protein-protein association ⬇️

Molecular interaction networks in the analyses of sequence variation and proteomics data

Multiple protein-protein interactions converging on the Prp38 protein during activation of the human spliceosome

Near-atomic structures of the BBSome reveal the basis for BBSome activation and binding to GPCR cargoes

Novel autophosphorylation sites of Src family kinases regulate kinase activity and SH2 domain-binding capacity

Phospho-tyrosine dependent protein-protein interaction network

Phosphorylation of the Bruchpilot N-terminus in Drosophila unlocks axonal transport of active zone building blocks

Phosphorylation-regulated axonal dependent transport of syntaxin 1 is mediated by a Kinesin-1 adapter.

Protein interaction perturbation profiling at amino-acid resolution

Protein synthesis at atomic resolution: mechanistics of translation in the light of highly resolved structures for the ribosome.

RIM-binding protein couples synaptic vesicle recruitment to release sites

RNA-protein interactions in ribosomes: in vitro selection from randomly fragmented rRNA.

RNA-structural mimicry in Escherichia coli ribosomal protein L4-dependent regulation of the S10 operon

Repeated two-hybrid screening detects transient protein–protein interactions

Ribosomal protein L2 is involved in the association of the ribosomal subunits, tRNA binding to A and P sites and peptidyl transfer ⬇️

SERF: in vitro election of random RNA fragments to identify protein binding sites within large RNAs

Selecting rRNA binding sites for the ribosomal proteins L4 and L6 from randomly fragmented rRNA: application of a method called SERF

Studying post-translational modifications with protein interaction networks

Systematic Protein-Protein Interaction Analysis Reveals Intersubcomplex Contacts in the Nuclear Pore Complex

T cell response in Shigella-induced reactive arthritis.

The ConsensusPathDB interaction database: 2013 update

The Molecular Architecture of Native BBSome Obtained by an Integrated Structural Approach

The collapsin response mediator protein 1 (CRMP-1) and the promyelocytic leukemia zinc finger protein (PLZF) bind to UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase (GNE), the key enzyme of sialic acid biosynthesis

The tetracycline resistance protein Tet(o) perturbs the conformation of the ribosomal decoding centre

The value of high quality protein-protein interaction networks for systems biology

Understanding Disease Variants through the Lens of Protein Interactions

[19] Preparation of functional ribosomal complexes and effect of buffer conditions on tRNA positions observed by cryoelectron microscopy