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List of works by Naftali Kaminski

A Dirichlet process mixture model for clustering longitudinal gene expression data

scientific article

A Patient-Gene Model for Temporal Expression Profiles in Clinical Studies

article

A functional and regulatory map of asthma

scientific article published on 5 October 2007

A functional genomic model for predicting prognosis in idiopathic pulmonary fibrosis.

scientific article published on 21 November 2015

A novel genomic signature with translational significance for human idiopathic pulmonary fibrosis

scientific article

A patient-gene model for temporal expression profiles in clinical studies

scientific article published in April 2007

A role for telomere length and chromosomal damage in idiopathic pulmonary fibrosis.

scientific article published on 9 July 2018

A role for the receptor for advanced glycation end products in idiopathic pulmonary fibrosis

scientific journal article

A variant in the promoter of MUC5B and idiopathic pulmonary fibrosis

scientific article

Accelerated variant of idiopathic pulmonary fibrosis: clinical behavior and gene expression pattern

scientific article published on 30 May 2007

Activation of human mesenchymal stem cells impacts their therapeutic abilities in lung injury by increasing interleukin (IL)-10 and IL-1RN levels

scientific article published on 02 October 2013

Acute Exacerbation of Idiopathic Pulmonary Fibrosis. An International Working Group Report.

scientific article published on 14 June 2016

Acute exacerbations of idiopathic pulmonary fibrosis

scientific article

Addressing Gender Inequality in Our Disciplines: Report from the Association of Pulmonary, Critical Care, and Sleep Division Chiefs

scientific article published on 01 December 2018

Aging Impairs Alveolar Macrophage Phagocytosis and Increases Influenza-Induced Mortality in Mice

scientific article published on 23 June 2017

Aging mesenchymal stem cells fail to protect because of impaired migration and antiinflammatory response

scientific article

Alignment and classification of time series gene expression in clinical studies

scientific article published in July 2008

Allele-specific transactivation of matrix metalloproteinase 7 by FOXA2 and correlation with plasma levels in idiopathic pulmonary fibrosis

scientific article published on 20 January 2012

Alterations in gene expression and DNA methylation during murine and human lung alveolar septation

scientific article

An HDAC9-MALAT1-BRG1 complex mediates smooth muscle dysfunction in thoracic aortic aneurysm.

scientific article published on 8 March 2018

An R package suite for microarray meta-analysis in quality control, differentially expressed gene analysis and pathway enrichment detection

scientific article

An airway epithelial iNOS-DUOX2-thyroid peroxidase metabolome drives Th1/Th2 nitrative stress in human severe asthma

scientific article

An allosteric site on MKP5 reveals a strategy for small-molecule inhibition

scientific article published on 25 August 2020

An integrated cell atlas of the lung in health and disease

Analysis of microarray experiments for pulmonary fibrosis

scientific article published on 01 January 2005

Application of 'Omics' and Systems Biology to Sarcoidosis Research

scientific article published on 20 October 2017

Approaching the degradome in idiopathic pulmonary fibrosis

scientific article published on 08 December 2007

Assessing Patterns of Palliative Care Referral and Location of Death in Patients with Idiopathic Pulmonary Fibrosis: A Sixteen-Year Single-Center Retrospective Cohort Study

scientific article published on 07 January 2019

Assessment of lung volume collapsibility in chronic obstructive lung disease patients using CT.

scientific article published on 15 March 2013

Assessment of microRNA differential expression and detection in multiplexed small RNA sequencing data

scientific article

Association between the MUC5B promoter polymorphism and survival in patients with idiopathic pulmonary fibrosis

scientific article

BAL Cell Gene Expression Is Indicative of Outcome and Airway Basal Cell Involvement in Idiopathic Pulmonary Fibrosis

scientific article published on 01 March 2019

BAL Cell Gene Expression in Severe Asthma Reveals Mechanisms of Severe Disease and Influences of Medications

scientific article published on 01 October 2019

BPIFA1 regulates lung neutrophil recruitment and interferon signaling during acute inflammation

scientific article published on 21 November 2018

Bidirectional elastic image registration using B-spline affine transformation

scientific article

Bioinformatics. A user's perspective.

scientific article

Biomarkers in idiopathic pulmonary fibrosis

scientific article published on September 2012

Blockade of the programmed death-1 pathway restores sarcoidosis CD4(+) T-cell proliferative capacity

scientific article

Blood transcriptional signatures of multiple sclerosis: unique gene expression of disease activity

scientific article published on March 2004

C-X-C motif chemokine 13 (CXCL13) is a prognostic biomarker of idiopathic pulmonary fibrosis

scientific article

CD28 down-regulation on circulating CD4 T-cells is associated with poor prognoses of patients with idiopathic pulmonary fibrosis

scientific article

Can blood gene expression predict which patients with multiple sclerosis will respond to interferon?

scientific article

Carbon monoxide modulates alpha-smooth muscle actin and small proline rich-1a expression in fibrosis

scientific article published on 18 December 2008

Cartilage oligomeric matrix protein in idiopathic pulmonary fibrosis

scientific article

Cathepsin B promotes collagen biosynthesis driving Bronchiolitis Obliterans Syndrome

scientific article published on 10 December 2020

Caveolin-1: a critical regulator of lung fibrosis in idiopathic pulmonary fibrosis

scientific article published on 18 December 2006

Characteristics of lung cancer among patients with idiopathic pulmonary fibrosis and interstitial lung disease - analysis of institutional and population data

scientific article published on 3 October 2018

Characterization and peripheral blood biomarker assessment of anti-Jo-1 antibody-positive interstitial lung disease

scientific article published on July 2009

Characterization of the COPD alveolar niche using single-cell RNA sequencing

scientific article published on 25 January 2022

Characterizing The Lung Disease Transcriptome With Next Generation Rna-Sequencing

Characterizing The Small RNA Transcriptome Associated With COPD And ILD Using Next Generation Sequencing

scholarly article published May 2012

Characterizing the small RNA transcriptome associated with COPD and ILD using next-generation sequencing

scholarly article by Joshua D Campbell et al published October 2012 in BMC Proceedings

Chronic lung diseases

scientific article

Chronic lung diseases are associated with gene expression programs favoring SARS-CoV-2 entry and severity

scientific article published on 14 July 2021

Clara cells attenuate the inflammatory response through regulation of macrophage behavior

scientific article

Climate change and lung health: presidential failure, professional responsibility

scientific article published on 21 April 2019

Climate change and lung health: the challenge for a new president

scientific article published on 19 January 2017

Collagen-producing lung cell atlas identifies multiple subsets with distinct localization and relevance to fibrosis

scientific article published on 21 April 2020

Comparative analysis of algorithms for signal quantitation from oligonucleotide microarrays

scientific article published on 29 January 2004

Comparison of normalization methods for CodeLink Bioarray data

scientific article

Comprehensive Genomic Profiling Of The Lung Transcriptome In Emphysema And IPF Using RNA-Seq

scholarly article published May 2012

Comprehensive analysis of gene expression on GOLD-2 Versus GOLD-0 smokers reveals novel genes important in the pathogenesis of COPD.

scientific article

Comprehensive gene expression profiles reveal pathways related to the pathogenesis of chronic obstructive pulmonary disease

scholarly article

Comprehensive genomic profiling of the lung transcriptome in emphysema and idiopathic pulmonary fibrosis using RNA-Seq

scientific article published in October 2012

Cross talk between Id1 and its interactive protein Dril1 mediate fibroblast responses to transforming growth factor-beta in pulmonary fibrosis

scientific article

Cutting Edge: Distinct B Cell Repertoires Characterize Patients with Mild and Severe COVID-19

scientific article published on 28 May 2021

Cytokine-like factor 1 gene expression is enriched in idiopathic pulmonary fibrosis and drives the accumulation of CD4+ T cells in murine lungs: evidence for an antifibrotic role in bleomycin injury

scientific article

Diaphragmatic paralysis: a clinical imitator of cardiorespiratory diseases.

scientific article

Distance-correlation based gene set analysis in longitudinal studies

scientific article published on 5 February 2018

Effects of aerobic training on gene expression in skeletal muscle of elderly men.

scientific article

Effects of perfusion pressure and renal flow upon albumin excretion in isolated perfused kidneys

scientific article published on 01 January 1990

Elevated CO2 regulates the Wnt signaling pathway in mammals, Drosophila melanogaster and Caenorhabditis elegans

scientific article published on 03 December 2019

End of an ERA: lessons from negative clinical trials in idiopathic pulmonary fibrosis

scientific article published on 01 July 2011

Engraftment and differentiation of human metanephroi into functional mature nephrons after transplantation into mice is accompanied by a profile of gene expression similar to normal human kidney development.

scientific article published in April 2002

Enhancing Autophagy with Drugs or Lung-directed Gene Therapy Reverses the Pathological Effects of Respiratory Epithelial Cell Proteinopathy.

scientific article

Epigenetics in idiopathic pulmonary fibrosis

scientific article published on 13 January 2015

Epigenomics of idiopathic pulmonary fibrosis: evaluating the first steps

scientific article published on September 2012

Evolving genomic approaches to idiopathic pulmonary fibrosis: moving beyond genes

scientific article

Expression of RXFP1 Is Decreased in Idiopathic Pulmonary Fibrosis. Implications for Relaxin-based Therapies

scientific article published on 16 June 2016

Expression of asthma susceptibility genes in bronchial epithelial cells and bronchial alveolar lavage in the Severe Asthma Research Program (SARP) cohort

scientific article published on 6 April 2016

Expression of regulatory platelet microRNAs in patients with sickle cell disease

scientific article

Extracellular Mitochondrial DNA Is Generated by Fibroblasts and Predicts Death in Idiopathic Pulmonary Fibrosis.

scientific article published on 7 August 2017

Extreme Trait Whole-Genome Sequencing Identifies PTPRO as a Novel Candidate Gene in Emphysema with Severe Airflow Obstruction.

scientific article published on 15 February 2017

FACS-assisted microarray profiling implicates novel genes and pathways in zebrafish gastrointestinal tract development

scientific article published on 27 June 2009

FK506-Binding Protein 10, a Potential Novel Drug Target for Idiopathic Pulmonary Fibrosis

scientific article

Features of mammalian microRNA promoters emerge from polymerase II chromatin immunoprecipitation data

scientific article

Fibrosis: Lessons from OMICS analyses of the human lung

scientific article published on 19 March 2018

Finally, Progress in Pulmonary Hypertension Associated with Heart Failure with Preserved Ejection Fraction.

scientific article

Finding subtypes of transcription factor motif pairs with distinct regulatory roles ⬇️

scientific article

First-in-human trial of a STAT3 decoy oligonucleotide in head and neck tumors: implications for cancer therapy.

scientific article published on 20 June 2012

From signatures to models: understanding cancer using microarrays

scientific article

Functional genomic assessment of phosgene-induced acute lung injury in mice

scientific article published on September 2013

Functional genomics of chlorine-induced acute lung injury in mice.

scientific article

Future directions in idiopathic pulmonary fibrosis research. An NHLBI workshop report

scientific article published on January 2014

Gene Expression Correlated with Severe Asthma Characteristics Reveals Heterogeneous Mechanisms of Severe Disease

scientific article published on 16 December 2016

Gene coexpression networks reveal novel molecular endotypes in alpha-1 antitrypsin deficiency

scientific article published on 10 December 2020

Gene correlation network analysis to identify regulatory factors in idiopathic pulmonary fibrosis

article

Gene expression analysis reveals matrilysin as a key regulator of pulmonary fibrosis in mice and humans

scientific article

Gene expression in relation to exhaled nitric oxide identifies novel asthma phenotypes with unique biomolecular pathways

scientific article

Gene expression patterns, prognostic and diagnostic markers, and lung cancer biology

scientific article published on May 2004

Gene expression profiles distinguish idiopathic pulmonary fibrosis from hypersensitivity pneumonitis

scientific article published on 15 September 2005

Gene expression profiles of acute exacerbations of idiopathic pulmonary fibrosis

scientific article

Gene expression profiles reveal molecular mechanisms involved in the progression and resolution of bleomycin-induced lung fibrosis

scientific article

Gene expression profiling as a window into idiopathic pulmonary fibrosis pathogenesis: can we identify the right target genes?

scientific article

Gene expression profiling of in vivo UVB-irradiated human epidermis.

scientific article

Gene expression profiling of target genes in ventilator-induced lung injury

scientific article published on 28 March 2006

Gene expression studies in lung development and lung stem cell biology

scientific article

Genetic variants associated with idiopathic pulmonary fibrosis susceptibility and mortality: a genome-wide association study

scientific article

Genome-Wide Association Study of Susceptibility to Idiopathic Pulmonary Fibrosis

scientific article published on 01 March 2020

Genome-wide association study identifies multiple susceptibility loci for pulmonary fibrosis

scientific journal article

Genome-wide imputation study identifies novel HLA locus for pulmonary fibrosis and potential role for auto-immunity in fibrotic idiopathic interstitial pneumonia

scientific article

Genomewide RNA expression profiling in lung identifies distinct signatures in idiopathic pulmonary arterial hypertension and secondary pulmonary hypertension

scientific article

Genomic differences distinguish the myofibroblast phenotype of distal lung fibroblasts from airway fibroblasts.

scientific article published on 14 July 2011

Genomics and proteomics of lung disease: conference summary

scientific article

Global expression profiling of fibroblast responses to transforming growth factor-beta1 reveals the induction of inhibitor of differentiation-1 and provides evidence of smooth muscle cell phenotypic switching

scientific article published on February 2003

Global methylation patterns in idiopathic pulmonary fibrosis

scientific article (publication date: 2012)

Haplotype association mapping of acute lung injury in mice implicates activin a receptor, type 1

scientific article

Have advanced research technologies made real impact on respiratory medicine?

scientific article published on 20 July 2010

High throughput determination of TGFβ1/SMAD3 targets in A549 lung epithelial cells

scientific article

High-Throughput Sequencing in Respiratory, Critical Care, and Sleep Medicine Research. An Official American Thoracic Society Workshop Report

scientific article published on 01 January 2019

Human and porcine early kidney precursors as a new source for transplantation

Hypercapnia increases airway smooth muscle contractility via caspase-7-mediated miR-133a-RhoA signaling

scientific article published on 01 September 2018

Identification Of Lung Disease-Associated Novel Transcripts And Alternative Splicing By RNA-Sequencing

Identification and validation of differentially expressed transcripts by RNA-sequencing of formalin-fixed, paraffin-embedded (FFPE) lung tissue from patients with Idiopathic Pulmonary Fibrosis

scientific article

Identifying Novel Transcripts And Alternative Splicing Associated With The ILD And COPD Lung Transcriptome Using MRNA-Seq

scholarly article published May 2011

Idiopathic pulmonary fibrosis: aberrant recapitulation of developmental programs?

scientific article

Idiopathic pulmonary fibrosis: time to get personal?

scientific article published on December 2013

Impact of Transcriptomics on Our Understanding of Pulmonary Fibrosis

scientific article published on 4 April 2018

Impact of a disease-management program on symptom burden and health-related quality of life in patients with idiopathic pulmonary fibrosis and their care partners

scientific article

Increase in p21 expression independent of the p53 pathway in bleomycin-induced lung fibrosis

scientific article published on 01 December 2004

Increased local expression of coagulation factor X contributes to the fibrotic response in human and murine lung injury.

scientific article published on 03 August 2009

Increased monocyte count as a cellular biomarker for poor outcomes in fibrotic diseases: a retrospective, multicentre cohort study

scientific article published on 29 March 2019

Inhibition and role of let-7d in idiopathic pulmonary fibrosis

scientific article

Integrated Genomics Reveals Convergent Transcriptomic Networks Underlying Chronic Obstructive Pulmonary Disease and Idiopathic Pulmonary Fibrosis

scientific article

Integrating multiomics longitudinal data to reconstruct networks underlying lung development

scientific article published on 21 August 2019

Integrative assessment of chlorine-induced acute lung injury in mice

scientific article published in August 2012

Integrative metabolome and transcriptome profiling reveals discordant energetic stress between mouse strains with differential sensitivity to acrolein-induced acute lung injury

scientific article

Integrative phenotyping framework (iPF): integrative clustering of multiple omics data identifies novel lung disease subphenotypes

scientific article published on 11 November 2015

Integrin alpha 11 in the regulation of the myofibroblast phenotype: implications for fibrotic diseases.

scientific article published on 17 November 2017

Interferon-gamma 1b in idiopathic pulmonary fibrosis: what we know and what must we learn

scientific article published in July 2004

LCox: a tool for selecting genes related to survival outcomes using longitudinal gene expression data

scientific article published on 13 February 2019

Leadership Primer for Current and Aspiring Pulmonary, Critical Care, and Sleep Medicine Academic Division Chiefs

scientific article published on 01 June 2018

Leading Change and Negotiation Strategies for Division Leaders in Clinical Medicine

scientific article published on 09 July 2019

Lessons from our patients: development of a warm autopsy program

scientific article published in July 2006

Let-7d microRNA affects mesenchymal phenotypic properties of lung fibroblasts

scientific article published on 17 January 2014

Local and Systemic CD4+ T Cell Exhaustion Reverses with Clinical Resolution of Pulmonary Sarcoidosis.

scientific article published on 6 November 2017

Long noncoding RNA TINCR is a novel regulator of human bronchial epithelial cell differentiation state

scientific article published on 01 February 2021

Loss of Twist1 in the Mesenchymal Compartment Promotes Increased Fibrosis in Experimental Lung Injury by Enhanced Expression of CXCL12

scientific article published on 08 February 2017

Loss of integrin alpha(v)beta6-mediated TGF-beta activation causes Mmp12-dependent emphysema

scientific article published in March 2003

Lung Endothelial MicroRNA-1 Regulates Tumor Growth and Angiogenesis

scientific article published on 30 August 2017

LungMAP: The Molecular Atlas of Lung Development Program.

scientific article published on 10 August 2017

MMP1 and MMP7 as potential peripheral blood biomarkers in idiopathic pulmonary fibrosis

scientific article

Machine learning implicates the IL-18 signaling axis in severe asthma

scientific article published on 08 November 2021

Macrophage-derived netrin-1 drives adrenergic nerve-associated lung fibrosis

scientific article published on 01 January 2021

Malignancy in lung transplantation: biomarkers, gender differences, and consideration of a systems biology approach.

scientific article

Matrix metalloproteinase (MMP)-19-deficient fibroblasts display a profibrotic phenotype.

scientific article published on 9 January 2015

Matrix metalloproteinase 3 is a mediator of pulmonary fibrosis

scientific article

Matrix metalloproteinase-19 is a key regulator of lung fibrosis in mice and humans

scientific article

Matrix metalloproteinase-19 promotes metastatic behavior in vitro and is associated with increased mortality in non-small cell lung cancer

scientific article

Mesenchymal stem cell engraftment in lung is enhanced in response to bleomycin exposure and ameliorates its fibrotic effects

scientific article

Mesenchymal stem cells use extracellular vesicles to outsource mitophagy and shuttle microRNAs

scientific article

MetaQC: objective quality control and inclusion/exclusion criteria for genomic meta-analysis

scientific article published on 23 November 2011

MicroRNA mimicry blocks pulmonary fibrosis

scientific article

MicroRNAs in idiopathic pulmonary fibrosis.

scientific article published on 04 February 2011

Microarray analysis of idiopathic pulmonary fibrosis ⬇️

scientific article published on September 1, 2003

Microbes Are Associated with Host Innate Immune Response in Idiopathic Pulmonary Fibrosis

scientific article published in July 2017

Micromanaging microRNAs: using murine models to study microRNAs in lung fibrosis

scientific article

Missing value imputation in high-dimensional phenomic data: imputable or not, and how?

scientific article

Mitochondrial antiviral signalling protein is crucial for the development of pulmonary fibrosis

scientific article published on 22 October 2020

Mitogen-activated protein kinases regulate susceptibility to ventilator-induced lung injury

scientific article (publication date: 2008)

Modified mesenchymal stem cells using miRNA transduction alter lung injury in a bleomycin model

scientific article published on 06 April 2017

Module-based prediction approach for robust inter-study predictions in microarray data

scientific article

Molecular staging of epithelial maturation using secretory cell-specific genes as markers

scientific journal article

Mouse Conjunctival Forniceal Gene Expression during Postnatal Development and Its Regulation by Krüppel-like Factor 4 ⬇️

scientific article published on July 1, 2011

Moving beyond gene expression: identification of lung-disease-associated novel transcripts and alternative splicing by RNA sequencing.

scientific article published in October 2012

Network analysis of temporal effects of intermittent and sustained hypoxia on rat lungs

scientific article published on 30 September 2008

Novel modeling of combinatorial miRNA targeting identifies SNP with potential role in bone density

scientific article

Nrf2 amplifies oxidative stress via induction of Klf9.

scientific article

Open-access biorepository for idiopathic pulmonary fibrosis. The way forward

scientific article

Oral antimycobacterial therapy in chronic cutaneous sarcoidosis: a randomized, single-masked, placebo-controlled study

scientific article

Oral immunotherapy with type V collagen in idiopathic pulmonary fibrosis

scientific article published on 22 January 2015

Oxidative stress alters syndecan-1 distribution in lungs with pulmonary fibrosis

scientific article published on 09 December 2008

PD-1 up-regulation on CD4 T cells promotes pulmonary fibrosis through STAT3-mediated IL-17A and TGF-β1 production

scientific article published on 01 September 2018

Palliative care and location of death in decedents with idiopathic pulmonary fibrosis

scientific article

Patients with idiopathic pulmonary fibrosis with antibodies to heat shock protein 70 have poor prognoses

scientific article published on April 2013

Pedigreed primate embryonic stem cells express homogeneous familial gene profiles

scientific article

Peripheral Blood Monuclear Cells Gene Expression Patterns Predict Mortality In Patients With Idiopathic Pulmonary Fibrosis

article

Peripheral blood mononuclear cell gene expression profiles predict poor outcome in idiopathic pulmonary fibrosis

scientific article published on October 2013

Peripheral blood proteins predict mortality in idiopathic pulmonary fibrosis

scientific article published on January 2012

Personalized medicine: applying 'omics' to lung fibrosis

scientific article

Perspectives on Burnout from Pulmonary, Critical Care, and Sleep Medicine Division Directors

scientific article published on 01 January 2020

Plasma B lymphocyte stimulator and B cell differentiation in idiopathic pulmonary fibrosis patients

scientific article published on 19 July 2013

Plasma mitochondrial DNA is associated with extrapulmonary sarcoidosis

scientific article published on 29 August 2019

Plasma proteins for risk prediction in idiopathic pulmonary fibrosis

scientific article published on June 2012

Plexin C1 deficiency permits synaptotagmin 7-mediated macrophage migration and enhances mammalian lung fibrosis

scientific article published on 8 September 2016

Pluripotency genes overexpressed in primate embryonic stem cells are localized on homologues of human chromosomes 16, 17, 19, and X

scientific article

Pneumocystis jirovecii colonization is associated with enhanced Th1 inflammatory gene expression in lungs of humans with chronic obstructive pulmonary disease

scientific article

Post-GWAS Prioritization Through Data Integration Provides Novel Insights on Chronic Obstructive Pulmonary Disease.

scientific article

Post-infectious inflammatory disease in MIS-C features elevated cytotoxicity signatures and autoreactivity that correlates with severity

scientific article published on 04 December 2020

Practical approaches to analyzing results of microarray experiments

scientific article

Precision Medicine: The New Frontier in Idiopathic Pulmonary Fibrosis

scientific article

Profibrotic role of miR-154 in pulmonary fibrosis

scientific article published on 4 October 2012

Rationale and design of the Genomic Research in Alpha-1 Antitrypsin Deficiency and Sarcoidosis (GRADS) study. Sarcoidosis protocol

journal article published in 2015

Rationale and design of the Genomic Research in Alpha-1 Antitrypsin Deficiency and Sarcoidosis study. Alpha-1 protocol

journal article published in 2015

Reconstructing differentiation networks and their regulation from time series single cell expression data

scientific article published on 9 January 2018

Reconstructing dynamic microRNA-regulated interaction networks

scientific article published on 28 August 2013

Reduced development of COVID-19 in children reveals molecular checkpoints gating pathogenesis illuminating potential therapeutics

scientific article published on 03 September 2020

Reducing protein oxidation reverses lung fibrosis

scientific article published on 09 July 2018

Regression of Kaposi's sarcoma after intravenous immunoglobulin treatment for polymyositis

scientific article published on 01 June 1994

Regularized Latent Class Model for Joint Analysis of High-Dimensional Longitudinal Biomarkers and a Time-to-Event Outcome

scientific article published on 05 December 2018

Regulation of alveolar septation by microRNA-489.

scientific article published on 30 December 2015

Relationship of DNA methylation and gene expression in idiopathic pulmonary fibrosis

scientific article

Reply: the bleomycin model: in pursuit of relevant biomakers

scientific article published on November 2015

Response

Retinoic acid-related orphan receptor-α is induced in the setting of DNA damage and promotes pulmonary emphysema

scientific article published on 28 June 2012

Retrograde signaling by a mtDNA-encoded non-coding RNA preserves mitochondrial bioenergetics

scientific article published on 30 October 2020

Right atrial pressure/pulmonary artery wedge pressure ratio: A more specific predictor of survival in pulmonary arterial hypertension.

scientific article published on 8 January 2016

Role of dual-specificity protein phosphatase DUSP10/MKP-5 in pulmonary fibrosis

scientific article published on 04 September 2019

S100A12 as a marker of worse cardiac output and mortality in pulmonary hypertension.

scientific article published on 2 April 2018

SH2 Domain-Containing Phosphatase-2 Is a Novel Antifibrotic Regulator in Pulmonary Fibrosis.

scientific article published on 13 October 2016

Secreted phosphoprotein 1 is a determinant of lung function development in mice.

scientific article

Selecting the most appropriate time points to profile in high-throughput studies

scientific article published on 26 January 2017

Serum Matrix Metalloproteinase-7, Respiratory Symptoms, and Mortality in Community-dwelling Adults: The Multi-Ethnic Study of Atherosclerosis

scientific article published on June 2017

Serum lysyl oxidase-like 2 levels and idiopathic pulmonary fibrosis disease progression

scientific article

Sialylation of MUC4β N-glycans by ST6GAL1 orchestrates human airway epithelial cell differentiation associated with type-2 inflammation

Sil overexpression in lung cancer characterizes tumors with increased mitotic activity

scientific article

Single-cell RNA-seq reveals ectopic and aberrant lung-resident cell populations in idiopathic pulmonary fibrosis

scientific article published on 08 July 2020

Single-cell connectomic analysis of adult mammalian lungs

scientific article published on 04 December 2019

Single-cell multi-omics reveals dyssynchrony of the innate and adaptive immune system in progressive COVID-19

scientific article published on 21 January 2022

Solving the Conundrum: Immunogenetics of Sarcoidosis

scientific article

Spatial distribution of marker gene activity in the mouse lung during alveolarization.

scientific article published on 3 November 2018

Strategic plan for lung vascular research: An NHLBI-ORDR Workshop Report

scientific article

Suppression of NLRX1 in chronic obstructive pulmonary disease

scientific article published on 4 May 2015

Syndecan-2 exerts antifibrotic effects by promoting caveolin-1-mediated transforming growth factor-β receptor I internalization and inhibiting transforming growth factor-β1 signaling

scientific article published on October 2013

Systemic inhibition of NF-kappaB activation protects from silicosis

scientific article (publication date: 2009)

T-ReCS: stable selection of dynamically formed groups of features with application to prediction of clinical outcomes

scientific article

TGF-beta is a critical mediator of acute lung injury

scientific article published in June 2001

Targeting of Both the c-Met and EGFR Pathways Results in Additive Inhibition of Lung Tumorigenesis in Transgenic Mice

scientific article

The DNA repair transcriptome in severe COPD

scientific article

The HLA class II Allele DRB1*1501 is over-represented in patients with idiopathic pulmonary fibrosis

scientific article

The aging lung: tissue telomere shortening in health and disease.

scientific article

The influence of radiographic phenotype and smoking status on peripheral blood biomarker patterns in chronic obstructive pulmonary disease

scientific article

The isolation and characterization of renal cancer initiating cells from human Wilms' tumour xenografts unveils new therapeutic targets

scientific article published on 13 December 2012

The mitochondrial cardiolipin remodeling enzyme lysocardiolipin acyltransferase is a novel target in pulmonary fibrosis

scientific article

The pulmonary histopathologic manifestations of the anti-Jo-1 tRNA synthetase syndrome

scientific article

Thyroid hormone inhibits lung fibrosis in mice by improving epithelial mitochondrial function.

scientific article

Time for a change: is idiopathic pulmonary fibrosis still idiopathic and only fibrotic?

scientific article published in February 2018

Time to share: lessons from post hoc analyses of IPF trials

scientific article

Toward Early Detection of Idiopathic Pulmonary Fibrosis

scientific article published on 01 December 2019

Toward Precision Medicine of Symptom Control in Asthma

scientific article published in January 2017

Toward systems biology of pulmonary hypertension

scientific article published on 27 February 2012

Towards systems biology of human pulmonary fibrosis

scientific article published on January 2007

Transcriptional regulatory model of fibrosis progression in the human lung

scientific article published on 14 November 2019

Transcriptome profiles in sarcoidosis and their potential role in disease prediction

scientific article published on 05 June 2017

Transgelin is a direct target of TGF-beta/Smad3-dependent epithelial cell migration in lung fibrosis

scientific article published on February 2008

Type I Interferon Transcriptional Network Regulates Expression of Coinhibitory Receptors in Human T cells

scientific article published on 31 October 2020

Up-regulation and profibrotic role of osteopontin in human idiopathic pulmonary fibrosis

scientific article

Update in diffuse parenchymal lung disease, 2013

scientific article

VCAM-1 is a TGF-β1 inducible gene upregulated in idiopathic pulmonary fibrosis

scientific article

Validation of a 52-gene risk profile for outcome prediction in patients with idiopathic pulmonary fibrosis: an international, multicentre, cohort study.

scientific article published on 20 September 2017

Validation of the prognostic value of MMP-7 in idiopathic pulmonary fibrosis

scientific article published on 19 October 2016

WNT5A is a regulator of fibroblast proliferation and resistance to apoptosis

scientific article

WNT5a in Extracellular Vesicles - A New Frontier for Pulmonary Fibrosis

scientific article published on 09 August 2018

When it comes to genes--IPF or NSIP, familial or sporadic--they're all the same

scientific article published on 01 January 2007

Wnt coreceptor Lrp5 is a driver of idiopathic pulmonary fibrosis

scientific article

XXIV World Allergy Congress 2015

scientific article (publication date: April 2016)

Zyxin is a transforming growth factor-β (TGF-β)/Smad3 target gene that regulates lung cancer cell motility via integrin α5β1.

scientific article

eQTL of bronchial epithelial cells and bronchial alveolar lavage deciphers GWAS-identified asthma genes

scientific article

iDREM: Interactive visualization of dynamic regulatory networks.

scientific article published on 14 March 2018

miR-199a-5p Is upregulated during fibrogenic response to tissue injury and mediates TGFbeta-induced lung fibroblast activation by targeting caveolin-1

scientific article

miR-21 mediates fibrogenic activation of pulmonary fibroblasts and lung fibrosis

scientific article

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