List of works - S Gnanakaran

Co-evolution of a broadly neutralizing HIV-1 antibody and founder virus

scientific article

Plasma IgG to linear epitopes in the V2 and V3 regions of HIV-1 gp120 correlate with a reduced risk of infection in the RV144 vaccine efficacy trial

scientific article

Escape from autologous neutralizing antibodies in acute/early subtype C HIV-1 infection requires multiple pathways

scientific article published on 18 September 2009

Broadly targeted CD8⁺ T cell responses restricted by major histocompatibility complex E.

scientific article published on 21 January 2016

Recurrent signature patterns in HIV-1 B clade envelope glycoproteins associated with either early or chronic infections

scientific article

Permeability Barrier of Gram-Negative Cell Envelopes and Approaches To Bypass It

scientific article published on January 1, 2015

Genetic signatures in the envelope glycoproteins of HIV-1 that associate with broadly neutralizing antibodies

scientific article

Unique mutational patterns in the envelope alpha 2 amphipathic helix and acquisition of length in gp120 hypervariable domains are associated with resistance to autologous neutralization of subtype C human immunodeficiency virus type 1.

scientific article published on 14 March 2007

Atomic-level description of amyloid beta-dimer formation

scientific article

Restructuring the Crystalline Cellulose Hydrogen Bond Network Enhances Its Depolymerization Rate

scientific article published on 05 July 2011

Highly complex neutralization determinants on a monophyletic lineage of newly transmitted subtype C HIV-1 Env clones from India

scientific article published on 23 January 2009

Clade-specific differences between human immunodeficiency virus type 1 clades B and C: diversity and correlations in C3-V4 regions of gp120.

scientific article published on 13 December 2006

Consistent patterns of change during the divergence of human immunodeficiency virus type 1 envelope from that of the inoculated virus in simian/human immunodeficiency virus-infected macaques

scientific article

The B cell response is redundant and highly focused on V1V2 during early subtype C infection in a Zambian seroconverter

scientific article

Appreciating HIV type 1 diversity: subtype differences in Env.

scientific article

The implications of patterns in HIV diversity for neutralizing antibody induction and susceptibility.

scientific article published on September 2009

Viral Escape from Neutralizing Antibodies in Early Subtype A HIV-1 Infection Drives an Increase in Autologous Neutralization Breadth

scientific article

Increased enzyme binding to substrate is not necessary for more efficient cellulose hydrolysis.

scientific article published on 19 June 2013

A signature in HIV-1 envelope leader peptide associated with transition from acute to chronic infection impacts envelope processing and infectivity

scientific article

Theoretical Study of the Remarkably Diverse Linkages in Lignin

A mechanistic understanding of allosteric immune escape pathways in the HIV-1 envelope glycoprotein

scientific article

epitopes immediately below the base of the V3 loop of gp120 as targets for the initial autologous neutralizing antibody response in two HIV-1 subtype B-infected individuals

scientific article

Subtype-specific conservation of isoleucine 309 in the envelope V3 domain is linked to immune evasion in subtype C HIV-1 infection

scientific article published on 21 May 2010

HIV-1 Neutralizing Antibody Signatures and Application to Epitope-Targeted Vaccine Design

article

Insights into Hydrogen Bonding and Stacking Interactions in Cellulose

scientific article published on 16 November 2011

Longitudinal Antigenic Sequences and Sites from Intra-Host Evolution (LASSIE) Identifies Immune-Selected HIV Variants

scientific article

Conformational flexibility of soluble cellulose oligomers: chain length and temperature dependence

scientific article published in October 2009

Identification of amino acid substitutions associated with neutralization phenotype in the human immunodeficiency virus type-1 subtype C gp120.

scientific article

Spike mutation pipeline reveals the emergence of a more transmissible form of SARS-CoV-2

scientific article published on 01 May 2020

Nature and kinetic analysis of carbon-carbon bond fragmentation reactions of cation radicals derived from SET-oxidation of lignin model compounds.

scientific article published in October 2010

Understanding the interaction of Lipoarabinomannan with membrane mimetic architectures

scientific article published on 26 October 2011

Assisted peptide folding by surface pattern recognition.

scientific article

Emergence of SARS-CoV-2 through recombination and strong purifying selection

scientific article published on 29 May 2020

Exploring new strategies for cellulosic biofuels production

article

Quantifying intramolecular binding in multivalent interactions: a structure-based synergistic study on Grb2-Sos1 complex

scientific article

The stability of cellulose: a statistical perspective from a coarse-grained model of hydrogen-bond networks

scientific article (publication date: 22 April 2009)

MARTINI Coarse-Grained Model for Crystalline Cellulose Microfibers

article

AIDS/HIV. Converging on an HIV vaccine

scientific article

Membrane-mediated regulation of the intrinsically disordered CD3ϵ cytoplasmic tail of the TCR.

scientific article published on May 2015

Temperature dependence of water interactions with the amide carbonyls of α-helices

scientific article

A data-driven approach to modeling the tripartite structure of multidrug resistance efflux pumps.

scientific article

Characterization of a disordered protein during micellation: interactions of α-synuclein with sodium dodecyl sulfate.

scientific article

Deducing conformational variability of intrinsically disordered proteins from infrared spectroscopy with Bayesian statistics.

scientific article published on August 2013

Coarse-Grained Model for the Interconversion between Native and Liquid Ammonia-Treated Crystalline Cellulose

article

Probing the Early Events Associated with Liquid Ammonia Pretreatment of Native Crystalline Cellulose

scientific article published on 21 July 2011

Identification of minimally interacting modules in an intrinsically disordered protein.

scientific article

Taste of sugar at the membrane: thermodynamics and kinetics of the interaction of a disaccharide with lipid bilayers

scientific article published on February 2013

Snails In Silico: A Review of Computational Studies on the Conopeptides.

scientific article

The solvent-dependent shift of the amide I band of a fully solvated peptide as a local probe for the solvent composition in the peptide/solvent interface.

scientific article published in December 2008

Rapid clearance of bacteria and their toxins: development of therapeutic proteins.

scientific article published on January 2007

List of works by S Gnanakaran

Co-evolution of a broadly neutralizing HIV-1 antibody and founder virus

Plasma IgG to linear epitopes in the V2 and V3 regions of HIV-1 gp120 correlate with a reduced risk of infection in the RV144 vaccine efficacy trial

Escape from autologous neutralizing antibodies in acute/early subtype C HIV-1 infection requires multiple pathways

Broadly targeted CD8⁺ T cell responses restricted by major histocompatibility complex E.

Recurrent signature patterns in HIV-1 B clade envelope glycoproteins associated with either early or chronic infections

Permeability Barrier of Gram-Negative Cell Envelopes and Approaches To Bypass It

Genetic signatures in the envelope glycoproteins of HIV-1 that associate with broadly neutralizing antibodies

Unique mutational patterns in the envelope alpha 2 amphipathic helix and acquisition of length in gp120 hypervariable domains are associated with resistance to autologous neutralization of subtype C human immunodeficiency virus type 1.

Atomic-level description of amyloid beta-dimer formation

Restructuring the Crystalline Cellulose Hydrogen Bond Network Enhances Its Depolymerization Rate

Highly complex neutralization determinants on a monophyletic lineage of newly transmitted subtype C HIV-1 Env clones from India

Clade-specific differences between human immunodeficiency virus type 1 clades B and C: diversity and correlations in C3-V4 regions of gp120.

Consistent patterns of change during the divergence of human immunodeficiency virus type 1 envelope from that of the inoculated virus in simian/human immunodeficiency virus-infected macaques

The B cell response is redundant and highly focused on V1V2 during early subtype C infection in a Zambian seroconverter

Appreciating HIV type 1 diversity: subtype differences in Env.

The implications of patterns in HIV diversity for neutralizing antibody induction and susceptibility.

Viral Escape from Neutralizing Antibodies in Early Subtype A HIV-1 Infection Drives an Increase in Autologous Neutralization Breadth

Increased enzyme binding to substrate is not necessary for more efficient cellulose hydrolysis.

A signature in HIV-1 envelope leader peptide associated with transition from acute to chronic infection impacts envelope processing and infectivity

Theoretical Study of the Remarkably Diverse Linkages in Lignin

A mechanistic understanding of allosteric immune escape pathways in the HIV-1 envelope glycoprotein

epitopes immediately below the base of the V3 loop of gp120 as targets for the initial autologous neutralizing antibody response in two HIV-1 subtype B-infected individuals

Subtype-specific conservation of isoleucine 309 in the envelope V3 domain is linked to immune evasion in subtype C HIV-1 infection

HIV-1 Neutralizing Antibody Signatures and Application to Epitope-Targeted Vaccine Design

Insights into Hydrogen Bonding and Stacking Interactions in Cellulose

Longitudinal Antigenic Sequences and Sites from Intra-Host Evolution (LASSIE) Identifies Immune-Selected HIV Variants

Conformational flexibility of soluble cellulose oligomers: chain length and temperature dependence

Identification of amino acid substitutions associated with neutralization phenotype in the human immunodeficiency virus type-1 subtype C gp120.

Spike mutation pipeline reveals the emergence of a more transmissible form of SARS-CoV-2

Nature and kinetic analysis of carbon-carbon bond fragmentation reactions of cation radicals derived from SET-oxidation of lignin model compounds.

Understanding the interaction of Lipoarabinomannan with membrane mimetic architectures

Assisted peptide folding by surface pattern recognition.

Emergence of SARS-CoV-2 through recombination and strong purifying selection

Exploring new strategies for cellulosic biofuels production

Quantifying intramolecular binding in multivalent interactions: a structure-based synergistic study on Grb2-Sos1 complex

The stability of cellulose: a statistical perspective from a coarse-grained model of hydrogen-bond networks

MARTINI Coarse-Grained Model for Crystalline Cellulose Microfibers

AIDS/HIV. Converging on an HIV vaccine

Membrane-mediated regulation of the intrinsically disordered CD3ϵ cytoplasmic tail of the TCR.

Temperature dependence of water interactions with the amide carbonyls of α-helices

A data-driven approach to modeling the tripartite structure of multidrug resistance efflux pumps.

Characterization of a disordered protein during micellation: interactions of α-synuclein with sodium dodecyl sulfate.

Deducing conformational variability of intrinsically disordered proteins from infrared spectroscopy with Bayesian statistics.

Coarse-Grained Model for the Interconversion between Native and Liquid Ammonia-Treated Crystalline Cellulose

Probing the Early Events Associated with Liquid Ammonia Pretreatment of Native Crystalline Cellulose

Identification of minimally interacting modules in an intrinsically disordered protein.

Taste of sugar at the membrane: thermodynamics and kinetics of the interaction of a disaccharide with lipid bilayers

Snails In Silico: A Review of Computational Studies on the Conopeptides.

The solvent-dependent shift of the amide I band of a fully solvated peptide as a local probe for the solvent composition in the peptide/solvent interface.

Rapid clearance of bacteria and their toxins: development of therapeutic proteins.