List of works - Tomer Hertz

A Modular Cytokine Analysis Method Reveals Novel Associations With Clinical Phenotypes and Identifies Sets of Co-signaling Cytokines Across Influenza Natural Infection Cohorts and Healthy Controls

scientific article published on 18 June 2019

A study of vaccine-induced immune pressure on breakthrough infections in the Phambili phase 2b HIV-1 vaccine efficacy trial

scientific article

Analysis of HLA A*02 association with vaccine efficacy in the RV144 HIV-1 vaccine trial

scientific article

Antibody Epitopes Identified in Critical Regions of Dengue Virus Nonstructural 1 Protein in Mouse Vaccination and Natural Human Infections

scientific article published on 5 April 2017

Breadth or conservation score (CS): which is more important for HIV-1 T cell based vaccine immunogen design?

scientific article published on 13 September 2012

Category learning from equivalence constraints.

scientific article published on 3 December 2008

Changes to the dynamic nature of hemagglutinin and the emergence of the 2009 pandemic H1N1 influenza virus

scientific article

Comprehensive sieve analysis of breakthrough HIV-1 sequences in the RV144 vaccine efficacy trial

scientific article

Constrained evolution drives limited influenza diversity

scientific article

Defining the risk of SARS-CoV-2 variants on immune protection

scientific article published on 31 March 2022

Efficient high throughput SARS-CoV-2 testing to detect asymptomatic carriers

scientific article published on 20 April 2020

Efficient high-throughput SARS-CoV-2 testing to detect asymptomatic carriers

scientific article published on 11 September 2020

HIV-1 vaccine-induced T-cell responses cluster in epitope hotspots that differ from those induced in natural infection with HIV-1.

scientific article

Identifying HLA supertypes by learning distance functions

scientific article published in January 2007

Increased HIV-1 vaccine efficacy against viruses with genetic signatures in Env V2

scientific article

MRKAd5 HIV-1 Gag/Pol/Nef vaccine-induced T-cell responses inadequately predict distance of breakthrough HIV-1 sequences to the vaccine or viral load

scientific article

Machine learning competition in immunology - Prediction of HLA class I binding peptides.

scientific article published on 29 September 2011

Mapping the landscape of host-pathogen coevolution: HLA class I binding and its relationship with evolutionary conservation in human and viral proteins.

scientific article

Mucosal immune responses predict clinical outcomes during influenza infection independently of age and viral load.

scientific article published on February 2014

Obesity Outweighs Protection Conferred by Adjuvanted Influenza Vaccination.

scientific article

PepDist: a new framework for protein-peptide binding prediction based on learning peptide distance functions

scientific article

Pooled-Peptide Epitope Mapping Strategies Are Efficient and Highly Sensitive: An Evaluation of Methods for Identifying Human T Cell Epitope Specificities in Large-Scale HIV Vaccine Efficacy Trials

scientific article published on 10 February 2016

Population sequencing using short reads: HIV as a case study.

scientific article published in January 2008

Putative amino acid determinants of the emergence of the 2009 influenza A (H1N1) virus in the human population

scientific article

Quantifiable predictive features define epitope-specific T cell receptor repertoires

scientific article published on 21 June 2017

Study of Healthcare Personnel with Influenza and other Respiratory Viruses in Israel (SHIRI): study protocol

article

Superior control of HIV-1 replication by CD8+ T cells targeting conserved epitopes: implications for HIV vaccine design

scientific article

T-cell based sieve analysis ties HLA A*02 to vaccine efficacy and IgA-C1 immune correlate in RV144 Thai trial

scientific article published on 13 September 2012

TCR meta-clonotypes for biomarker discovery with tcrdist3: quantification of public, HLA-restricted TCR biomarkers of SARS-CoV-2 infection

scientific article published on 26 December 2020

The kinase mTOR modulates the antibody response to provide cross-protective immunity to lethal infection with influenza virus.

scientific article

Vaccination With Heterologous HIV-1 Envelope Sequences and Heterologous Adenovirus Vectors Increases T-Cell Responses to Conserved Regions: HVTN 083

scientific article

List of works by Tomer Hertz

A Modular Cytokine Analysis Method Reveals Novel Associations With Clinical Phenotypes and Identifies Sets of Co-signaling Cytokines Across Influenza Natural Infection Cohorts and Healthy Controls

A study of vaccine-induced immune pressure on breakthrough infections in the Phambili phase 2b HIV-1 vaccine efficacy trial

Analysis of HLA A*02 association with vaccine efficacy in the RV144 HIV-1 vaccine trial

Antibody Epitopes Identified in Critical Regions of Dengue Virus Nonstructural 1 Protein in Mouse Vaccination and Natural Human Infections

Breadth or conservation score (CS): which is more important for HIV-1 T cell based vaccine immunogen design?

Category learning from equivalence constraints.

Changes to the dynamic nature of hemagglutinin and the emergence of the 2009 pandemic H1N1 influenza virus

Comprehensive sieve analysis of breakthrough HIV-1 sequences in the RV144 vaccine efficacy trial

Constrained evolution drives limited influenza diversity

Defining the risk of SARS-CoV-2 variants on immune protection

Efficient high throughput SARS-CoV-2 testing to detect asymptomatic carriers

Efficient high-throughput SARS-CoV-2 testing to detect asymptomatic carriers

HIV-1 vaccine-induced T-cell responses cluster in epitope hotspots that differ from those induced in natural infection with HIV-1.

Identifying HLA supertypes by learning distance functions

Increased HIV-1 vaccine efficacy against viruses with genetic signatures in Env V2

MRKAd5 HIV-1 Gag/Pol/Nef vaccine-induced T-cell responses inadequately predict distance of breakthrough HIV-1 sequences to the vaccine or viral load

Machine learning competition in immunology - Prediction of HLA class I binding peptides.

Mapping the landscape of host-pathogen coevolution: HLA class I binding and its relationship with evolutionary conservation in human and viral proteins.

Mucosal immune responses predict clinical outcomes during influenza infection independently of age and viral load.

Obesity Outweighs Protection Conferred by Adjuvanted Influenza Vaccination.

PepDist: a new framework for protein-peptide binding prediction based on learning peptide distance functions

Pooled-Peptide Epitope Mapping Strategies Are Efficient and Highly Sensitive: An Evaluation of Methods for Identifying Human T Cell Epitope Specificities in Large-Scale HIV Vaccine Efficacy Trials

Population sequencing using short reads: HIV as a case study.

Putative amino acid determinants of the emergence of the 2009 influenza A (H1N1) virus in the human population

Quantifiable predictive features define epitope-specific T cell receptor repertoires

Study of Healthcare Personnel with Influenza and other Respiratory Viruses in Israel (SHIRI): study protocol

Superior control of HIV-1 replication by CD8+ T cells targeting conserved epitopes: implications for HIV vaccine design

T-cell based sieve analysis ties HLA A*02 to vaccine efficacy and IgA-C1 immune correlate in RV144 Thai trial

TCR meta-clonotypes for biomarker discovery with tcrdist3: quantification of public, HLA-restricted TCR biomarkers of SARS-CoV-2 infection

The kinase mTOR modulates the antibody response to provide cross-protective immunity to lethal infection with influenza virus.

Vaccination With Heterologous HIV-1 Envelope Sequences and Heterologous Adenovirus Vectors Increases T-Cell Responses to Conserved Regions: HVTN 083