List of works by Daniel R Noguera

A broad specificity β-propeller enzyme from Rhodopseudomonas palustris that hydrolyzes many lactones including γ-valerolactone

scientific article published in January 2023

A group of sequence-related sphingomonad enzymes catalyzes cleavage of β-aryl ether linkages in lignin β-guaiacyl and β-syringyl ether dimers

scientific article published on October 2014

A heterodimeric glutathione S-transferase that stereospecifically breaks lignin's β(R)-aryl ether bond reveals the diversity of bacterial β-etherases

scientific article published on 12 December 2018

A unified model describing the role of hydrogen in the growth ofDesulfovibrio vulgaris under different environmental conditions

article by Daniel R Noguera et al published 20 September 1998 in Biotechnology and Bioengineering

Adsorption of Cu2+ and Zn2+ by extracellular polymeric substances (EPS) in different sludges: Effect of EPS fractional polarity on binding mechanism.

scientific article published on 14 September 2016

Ammonia- and nitrite-oxidizing bacterial communities in a pilot-scale chloraminated drinking water distribution system.

scientific article published on January 2002

Ammonia-oxidizing microbial communities in reactors with efficient nitrification at low-dissolved oxygen

scientific article

An integrated approach to reconstructing genome-scale transcriptional regulatory networks

scientific article published on 27 February 2015

Anaerobic Degradation of Syringic Acid by an Adapted Strain of Rhodopseudomonas palustris

scientific article published on 21 January 2020

Ancestral genome reconstruction identifies the evolutionary basis for trait acquisition in polyphosphate accumulating bacteria

scientific article (publication date: December 2016)

Aromatic Dimer Dehydrogenases from <i>Novosphingobium aromaticivorans</i> Reduce Monoaromatic Diketones

scientific article published on 06 October 2021

Automated design of probes for rRNA-targeted fluorescence in situ hybridization reveals the advantages of using dual probes for accurate identification.

scientific article

Autotrophic and mixotrophic metabolism of an anammox bacterium revealed by in vivo 13C and 2H metabolic network mapping

scientific article published on 20 October 2020

Biochemical transformation of lignin for deriving valued commodities from lignocellulose.

scientific article published on 24 March 2017

COnTORT: COmprehensive Transcriptomic ORganizational Tool for Simultaneously Retrieving and Organizing Numerous Gene Expression Data Sets from the NCBI Gene Expression Omnibus Database

scientific article published on 18 June 2020

Candidatus Accumulibacter phosphatis clades enriched under cyclic anaerobic and microaerobic conditions simultaneously use different electron acceptors

scientific article published on 16 June 2016

CceR and AkgR regulate central carbon and energy metabolism in alphaproteobacteria

scientific article published on 3 February 2015

Characterization of two ammonia-oxidizing bacteria isolated from reactors operated with low dissolved oxygen concentrations

scientific article published in May 2007

Combining Genome-Scale Experimental and Computational Methods To Identify Essential Genes in Rhodobacter sphaeroides

scientific article

Community Assembly and Ecology of Activated Sludge under Photosynthetic Feast-Famine Conditions.

scientific article

Comparing biofilm models for a single species biofilm system.

scientific article published in January 2004

Comparison between direct microscopy and flow cytometry for rRNA-based quantification of Candidatus Accumulibacter phosphatis in activated sludge.

scientific article published in February 2006

Controlling biosolids phosphorus content in enhanced biological phosphorus removal reactors

scientific article published in May 2003

Could in situ DNA-hybridization chain reaction enable simple and effective detection of identity and function in whole cell hybridizations?

scientific article published on 4 August 2015

DECIPHER, a search-based approach to chimera identification for 16S rRNA sequences

2012 scientific article

Denitrification capabilities of two biological phosphorus removal sludges dominated by different Candidatus Accumulibacter clades

scientific article

Development of a solar-powered microbial fuel cell

scientific article published on 9 October 2007

Development of thermodynamic models for simulating probe dissociation profiles in fluorescence in situ hybridization

scientific article published in February 2007

Diagnosing and Predicting Mixed-Culture Fermentations with Unicellular and Guild-Based Metabolic Models

scientific article published on 29 September 2020

Dissolved organic matter removal during coal slag additive soil aquifer treatment for secondary effluent recharging: Contribution of aerobic biodegradation.

scientific article published on 2 April 2015

Diversity of nitrifying bacteria in full-scale chloraminated distribution systems.

scientific article published on January 2003

Effect of storage conditions on the stability and fermentability of enzymatic lignocellulosic hydrolysate

scientific article

Effects of localised, low-voltage pulsed electric fields on the development and inhibition of Pseudomonas aeruginosa biofilms.

scientific article published in January 2006

Electron Partitioning During Light- and Nutrient-Powered Hydrogen Production by Rhodobacter sphaeroides

article

Engineering <i>Novosphingobium aromaticivorans</i> to produce <i>cis,cis</i> -muconic acid from biomass aromatics

scientific article published on 24 January 2024

Evaluating the effect of dissolved oxygen on ammonia-oxidizing bacterial communities in activated sludge.

scientific article published in August 2004

Exploiting extension bias in polymerase chain reaction to improve primer specificity in ensembles of nearly identical DNA templates.

scientific article

Exploring the Meta-regulon of the CRP/FNR Family of Global Transcriptional Regulators in a Partial-Nitritation Anammox Microbiome

scientific article published on 12 October 2021

Exploring the in situ accessibility of small subunit ribosomal RNA of members of the domains Bacteria and Eukarya to oligonucleotide probes

scientific article published on 20 January 2012

Genome-Enabled Insights into the Ecophysiology of the Comammox Bacterium "Candidatus Nitrospira nitrosa"

scientific article published on 12 September 2017

Global analysis of photosynthesis transcriptional regulatory networks.

scientific article published on 11 December 2014

Global insights into energetic and metabolic networks in Rhodobacter sphaeroides

scientific article

In vitro enzymatic depolymerization of lignin with release of syringyl, guaiacyl, and tricin units

scientific article published on 27 November 2017

Increasing the economic value of lignocellulosic stillage through medium-chain fatty acid production

scientific article published on 19 July 2018

Inhibition of barnacle (Amphibalanus amphitrite) cyprid settlement by means of localized, pulsed electric fields

scientific article

Integrated Omic Analyses Provide Evidence that a " Accumulibacter phosphatis" Strain Performs Denitrification under Microaerobic Conditions

article

Introduction to the IWA task group on biofilm modeling

scientific article published in January 2004

Investigating the Chemolithoautotrophic and Formate Metabolism of Nitrospira moscoviensis by Constraint-Based Metabolic Modeling and <sup>13</sup>C-Tracer Analysis

scientific article published on 17 August 2021

Involvement of reactive oxygen species in the electrochemical inhibition of barnacle (Amphibalanus amphitrite) settlement.

scientific article published in January 2009

Making all parts of the 16S rRNA of Escherichia coli accessible in situ to single DNA oligonucleotides.

scientific article

Mathematical tools to optimize the design of oligonucleotide probes and primers.

scientific article

Maximizing reductant flow into microbial H2 production.

scientific article published on 28 October 2011

Mechanistic approach to the problem of hybridization efficiency in fluorescent in situ hybridization.

scientific article published on December 2004

Medium-Chain Fatty Acid Synthesis by "Candidatus Weimeria bifida" gen. nov., sp. nov., and "Candidatus Pseudoramibacter fermentans" sp. nov

scientific article published on 21 January 2020

Metabolic Differentiation of Co-occurring Accumulibacter Clades Revealed through Genome-Resolved Metatranscriptomics

scientific article published on 06 July 2021

Metabolic network analysis reveals microbial community interactions in anammox granules.

scientific article

Metabolism of Multiple Aromatic Compounds in Corn Stover Hydrolysate by Rhodopseudomonas palustris

scientific article

Metagenome-Assembled Genomes from a Microbiome Grown in Dairy Manure Hydrolysate

scientific article published in 2022

Metagenomes and Metagenome-Assembled Genomes from Microbial Communities Fermenting Ultrafiltered Milk Permeate

scientific article published in 2022

Metagenomes and Metagenome-Assembled Genomes from Microbiomes Metabolizing Thin Stillage from an Ethanol Biorefinery

scientific article published in 2022

Metatranscriptomic and Thermodynamic Insights into Medium-Chain Fatty Acid Production Using an Anaerobic Microbiome

scientific article published on 20 November 2018

Metatranscriptomic insights on gene expression and regulatory controls in Candidatus Accumulibacter phosphatis

scientific article

Microbial acceleration of aerobic pyrite oxidation at circumneutral pH.

scientific article

Microbiology of enhanced biological phosphorus removal in aerated-anoxic Orbal processes

scientific article published in September 2002

Mixed Acid Fermentation of Carbohydrate-Rich Dairy Manure Hydrolysate

scientific article published on 03 August 2021

Modeling formamide denaturation of probe-target hybrids for improved microarray probe design in microbial diagnostics

scientific article

Modelling a spatially heterogeneous biofilm and the bulk fluid: selected results from benchmark problem 2 (BM2).

scientific article published in January 2004

Molecular analysis of ammonia-oxidizing bacterial populations in aerated-anoxic orbal processes

scientific article published in January 2002

Mutations That Alter the Bacterial Cell Envelope Increase Lipid Production.

scientific article

Nitrite concentration influences the population structure of Nitrospira-like bacteria

scientific article

Nitrospira community composition in nitrifying reactors operated with two different dissolved oxygen levels.

scientific article published in August 2008

Novosphingobium aromaticivorans uses a Nu-class glutathione-S-transferase as a glutathione lyase in breaking the β-aryl ether bond of lignin

scientific article published on 15 February 2018

Oxygen-dependent regulation of bacterial lipid production

scientific article

PRODUCTION OF POLYHYDROXYALKANOATE DURING TREATMENT OF LOW-PHOSPHORUS CONTENT WASTEWATER

article

Pathways involved in reductant distribution during photobiological H(2) production by Rhodobacter sphaeroides.

scientific article published on 19 August 2011

Physical enrichment of polyphosphate-accumulating organisms in activated sludge

scientific article published in July 2002

Pilot plant demonstration of stable and efficient high rate biological nutrient removal with low dissolved oxygen conditions.

scientific article published on 13 May 2017

Presence of Rhodocyclus in a full-scale wastewater treatment plant and their participation in enhanced biological phosphorus removal

scientific article published in January 2002

Production of carotenoids from aromatics and pretreated lignocellulosic biomass by <i>Novosphingobium aromaticivorans</i>

scientific article published on 21 December 2023

Production of polyhydroxyalkanoate during treatment of low-phosphorus-content wastewater

scientific article published in July 2004

Promoter Architecture Differences among <i>Alphaproteobacteria</i> and Other Bacterial Taxa

scientific article published on 13 July 2021

Quantification of methanogenic groups in anaerobic biological reactors by oligonucleotide probe hybridization

scientific article

Quantification of target molecules needed to detect microorganisms by fluorescence in situ hybridization (FISH) and catalyzed reporter deposition-FISH.

scientific article

Quantifying the effects of light intensity on bioproduction and maintenance energy during photosynthetic growth of Rhodobacter sphaeroides

scientific article

Quantitative Cellular Automaton Model for Biofilms

article

Reduction and Acetylation of 2,4-Dinitrotoluene by a Pseudomonas aeruginosa Strain.

scientific article

Results from the multi-species benchmark problem 3 (BM3) using two-dimensional models.

scientific article

Revised sequence and annotation of the Rhodobacter sphaeroides 2.4.1 genome

scientific article published on December 2012

Simultaneous determination of bacterial viability and identity in biofilms using ethidium monoazide and fluorescent in situ hybridization.

scientific article published in January 2003

Soluble microbial products (SMP) in anaerobic chemostats

scientific article published on 01 November 1994

Stereochemical features of glutathione-dependent enzymes in the Sphingobium sp. strain SYK-6 β-aryl etherase pathway.

scientific article published on 07 February 2014

Structural Basis of Stereospecificity in the Bacterial Enzymatic Cleavage of β-Aryl Ether Bonds in Lignin

scientific article

Structural and Biochemical Characterization of the Early and Late Enzymes in the Lignin β-Aryl Ether Cleavage Pathway from Sphingobium sp. SYK-6

scientific article

Systematic evaluation of single mismatch stability predictors for fluorescence in situ hybridization

scientific article published on 14 August 2008

Taking advantage of aerated-anoxic operation in a full-scale University of Cape Town process

scientific article

The role of CenKR in the coordination of <i>Rhodobacter sphaeroides</i> cell elongation and division

scientific article published on 7 June 2023

Transformation and speciation of typical heavy metals in soil aquifer treatment system during long time recharging with secondary effluent: Depth distribution and combination

scientific article published on 15 September 2016

Transformation of erythromycin during secondary effluent soil aquifer recharging: Removal contribution and degradation path.

scientific article

Utilization of artificial recharged effluent as makeup water for industrial cooling system: corrosion and scaling.

scientific article published on May 2016

Whole-Community Metagenomics in Two Different Anammox Configurations: Process Performance and Community Structure

scientific article published on 31 March 2017

iRsp1095: a genome-scale reconstruction of the Rhodobacter sphaeroides metabolic network

scientific article (publication date: 21 July 2011)

Paulina is supported by:

About Paulina

Help