List of works - Avi Flamholz

A note on the kinetics of enzyme action: a decomposition that highlights thermodynamic effects

scientific article published on 23 July 2013

An integrated open framework for thermodynamics of reactions that combines accuracy and coverage.

scientific article

Design and analysis of metabolic pathways supporting formatotrophic growth for electricity-dependent cultivation of microbes

scientific article

Functional reconstitution of a bacterial CO2 concentrating mechanism in E. coli

scientific article published on 21 October 2020

Global characterization of in vivo enzyme catalytic rates and their correspondence to in vitro kcat measurements

scientific article published on 7 March 2016

Glycolytic strategy as a tradeoff between energy yield and protein cost

scientific article published on 29 April 2013

Highly active rubiscos discovered by systematic interrogation of natural sequence diversity

scientific article published on 05 June 2020

Hydrophobicity and charge shape cellular metabolite concentrations

scientific article

Nearest Neighbor Networks: clustering expression data based on gene neighborhoods

scientific article

Pathway thermodynamics highlights kinetic obstacles in central metabolism

scientific article

Phosphoglycolate salvage in a chemolithoautotroph using the Calvin cycle

scientific article published on 20 August 2020

Profiling of engineering hotspots identifies an allosteric CRISPR-Cas9 switch

scientific article

Protein cost minimization promotes the emergence of coenzyme redundancy

scientific article published in 2022

SARS-CoV-2 (COVID-19) by the numbers

scientific article published on 31 March 2020

Spanning high-dimensional expression space using ribosome-binding site combinatorics

scientific article published on 6 March 2013

The quantified cell

scientific article

The total number and mass of SARS-CoV-2 virions in an infected person

scientific article published on 17 November 2020

Thermodynamic constraints shape the structure of carbon fixation pathways ⬇️

scientific article published on May 17, 2012

Visual account of protein investment in cellular functions

scientific article

List of works by Avi Flamholz

A note on the kinetics of enzyme action: a decomposition that highlights thermodynamic effects

An integrated open framework for thermodynamics of reactions that combines accuracy and coverage.

Design and analysis of metabolic pathways supporting formatotrophic growth for electricity-dependent cultivation of microbes

Functional reconstitution of a bacterial CO2 concentrating mechanism in E. coli

Global characterization of in vivo enzyme catalytic rates and their correspondence to in vitro kcat measurements

Glycolytic strategy as a tradeoff between energy yield and protein cost

Highly active rubiscos discovered by systematic interrogation of natural sequence diversity

Hydrophobicity and charge shape cellular metabolite concentrations

Nearest Neighbor Networks: clustering expression data based on gene neighborhoods

Pathway thermodynamics highlights kinetic obstacles in central metabolism

Phosphoglycolate salvage in a chemolithoautotroph using the Calvin cycle

Profiling of engineering hotspots identifies an allosteric CRISPR-Cas9 switch

Protein cost minimization promotes the emergence of coenzyme redundancy

SARS-CoV-2 (COVID-19) by the numbers

Spanning high-dimensional expression space using ribosome-binding site combinatorics

The quantified cell

The total number and mass of SARS-CoV-2 virions in an infected person

Thermodynamic constraints shape the structure of carbon fixation pathways ⬇️

Visual account of protein investment in cellular functions