List of works - Ahmed Mahfouz

A comparison of automatic cell identification methods for single-cell RNA sequencing data

scientific article published on 09 September 2019

A structural equation model for imaging genetics using spatial transcriptomics

An educational guide for nanopore sequencing in the classroom

scientific article published on 23 January 2020

Author Correction: Timing and localization of human dystrophin isoform expression provide insights into the cognitive phenotype of Duchenne muscular dystrophy

scientific article published in March 2018

Brain transcriptome atlases: a computational perspective

scientific article published on December 2016

BrainScope: interactive visual exploration of the spatial and temporal human brain transcriptome

scientific article

Community-driven ELIXIR activities in single-cell omics

scientific article published on 29 July 2022

Continuous infusion of manganese improves contrast and reduces side effects in manganese-enhanced magnetic resonance imaging studies

scientific article published on 21 October 2016

Cortical Spreading Depression Causes Unique Dysregulation of Inflammatory Pathways in a Transgenic Mouse Model of Migraine

scientific article published on 31 March 2016

Differential analysis of binarized single-cell RNA sequencing data captures biological variation

scientific article published on 22 December 2021

Gene co-expression analysis identifies brain regions and cell types involved in migraine pathophysiology: a GWAS-based study using the Allen Human Brain Atlas

scientific article published on 22 February 2016

Genome-wide coexpression of steroid receptors in the mouse brain: Identifying signaling pathways and functionally coordinated regions

scientific article published on 25 January 2016

Hi-C Chromatin Interaction Networks Predict Co-expression in the Mouse Cortex.

scientific article published on 12 May 2015

NeuroD Factors Discriminate Mineralocorticoid From Glucocorticoid Receptor DNA Binding in the Male Rat Brain

scientific article published on 24 January 2017

Pan-cancer subtyping in a 2D-map shows substructures that are driven by specific combinations of molecular characteristics

scientific article published on 25 April 2016

Shared Pathways Among Autism Candidate Genes Determined by Co-expression Network Analysis of the Developing Human Brain Transcriptome

scientific article

Single-cell isoform RNA sequencing characterizes isoforms in thousands of cerebellar cells

scholarly article by Ishaan Gupta et al published 15 October 2018 in Nature Biotechnology

Single-cell reference mapping to construct and extend cell type hierarchies

scientific article

The single-cell eQTLGen consortium

scientific article published on 09 March 2020

Timing and localization of human dystrophin isoform expression provide insights into the cognitive phenotype of Duchenne muscular dystrophy

scientific article

Transcriptomic signatures of brain regional vulnerability to Parkinson's disease

scientific article published on 05 March 2020

Ultrafast localization of the optic disc using dimensionality reduction of the search space

scientific article published on 01 January 2009

Untangling biological factors influencing trajectory inference from single cell data

scientific article published on 22 July 2020

Visualizing the spatial gene expression organization in the brain through non-linear similarity embeddings

scientific article published on 16 October 2014

List of works by Ahmed Mahfouz

A comparison of automatic cell identification methods for single-cell RNA sequencing data

A structural equation model for imaging genetics using spatial transcriptomics

An educational guide for nanopore sequencing in the classroom

Author Correction: Timing and localization of human dystrophin isoform expression provide insights into the cognitive phenotype of Duchenne muscular dystrophy

Brain transcriptome atlases: a computational perspective

BrainScope: interactive visual exploration of the spatial and temporal human brain transcriptome

Community-driven ELIXIR activities in single-cell omics

Continuous infusion of manganese improves contrast and reduces side effects in manganese-enhanced magnetic resonance imaging studies

Cortical Spreading Depression Causes Unique Dysregulation of Inflammatory Pathways in a Transgenic Mouse Model of Migraine

Differential analysis of binarized single-cell RNA sequencing data captures biological variation

Gene co-expression analysis identifies brain regions and cell types involved in migraine pathophysiology: a GWAS-based study using the Allen Human Brain Atlas

Genome-wide coexpression of steroid receptors in the mouse brain: Identifying signaling pathways and functionally coordinated regions

Hi-C Chromatin Interaction Networks Predict Co-expression in the Mouse Cortex.

NeuroD Factors Discriminate Mineralocorticoid From Glucocorticoid Receptor DNA Binding in the Male Rat Brain

Pan-cancer subtyping in a 2D-map shows substructures that are driven by specific combinations of molecular characteristics

Shared Pathways Among Autism Candidate Genes Determined by Co-expression Network Analysis of the Developing Human Brain Transcriptome

Single-cell isoform RNA sequencing characterizes isoforms in thousands of cerebellar cells

Single-cell reference mapping to construct and extend cell type hierarchies

The single-cell eQTLGen consortium

Timing and localization of human dystrophin isoform expression provide insights into the cognitive phenotype of Duchenne muscular dystrophy

Transcriptomic signatures of brain regional vulnerability to Parkinson's disease

Ultrafast localization of the optic disc using dimensionality reduction of the search space

Untangling biological factors influencing trajectory inference from single cell data

Visualizing the spatial gene expression organization in the brain through non-linear similarity embeddings