List of works - Lizhe Zhu

A Flexible Domain-Domain Hinge Promotes an Induced-fit Dominant Mechanism for the Loading of Guide-DNA into Argonaute Protein in Thermus thermophilus

scientific article

A deep learning framework to predict binding preference of RNA constituents on protein surface

scientific article published on 30 October 2019

Adaptive partitioning by local density-peaks: An efficient density-based clustering algorithm for analyzing molecular dynamics trajectories

scientific article published on 21 November 2016

Assessing the Performance of Traveling-salesman based Automated Path Searching (TAPS) on Complex Biomolecular Systems

scientific article published on 16 July 2021

Elucidating Mechanisms of Molecular Recognition Between Human Argonaute and miRNA Using Computational Approaches

scientific article published in January 2017

Elucidating dominant pathways of the nano-particle self-assembly process.

scientific article

Elucidation of the conformational dynamics of multi-body systems by construction of Markov state models

scientific article published on 17 June 2016

Harnessing complexity in molecular self-assembly using computer simulations.

scientific article published on 26 February 2018

Improving the productivity of monodisperse polyhedral cages by the rational design of kinetic self-assembly pathways

scientific article published on 01 April 2018

Kinetics-Controlled Amphiphile Self-Assembly Processes.

scientific article published on 2 April 2017

Markov State Models Reveal a Two-Step Mechanism of miRNA Loading into the Human Argonaute Protein: Selective Binding followed by Structural Re-arrangement

scientific article published on 16 July 2015

Molecular mechanisms of RNA polymerase II transcription elongation elucidated by kinetic network models.

scientific article published on 2 February 2018

Path lumping: An efficient algorithm to identify metastable path channels for conformational dynamics of multi-body systems

scientific article

Role of Fluctuations in Ligand Binding Cooperativity of Membrane Receptors

scientific article published in Physical Review Letters

Single-Molecule Investigations of Conformation Adaptation of Porphyrins on Surfaces.

scientific article

Site-Mutation of Hydrophobic Core Residues Synchronically Poise Super Interleukin 2 for Signaling: Identifying Distant Structural Effects through Affordable Computations.

scientific article

Structural dissection of an interaction between transcription initiation and termination factors implicated in promoter-terminator cross-talk.

scientific article

TAPS: A traveling-salesman based automated path searching method for functional conformational changes of biological macromolecules

scientific article published on 01 March 2019

The HAMP signal relay domain adopts multiple conformational states through collective piston and tilt motions

scientific article

Understanding the core of RNA interference: The dynamic aspects of Argonaute-mediated processes.

scientific article

Unraveling the aggregation effect on amorphous phase AIE luminogens: a computational study

scientific article published on 15 July 2016

List of works by Lizhe Zhu

A Flexible Domain-Domain Hinge Promotes an Induced-fit Dominant Mechanism for the Loading of Guide-DNA into Argonaute Protein in Thermus thermophilus

A deep learning framework to predict binding preference of RNA constituents on protein surface

Adaptive partitioning by local density-peaks: An efficient density-based clustering algorithm for analyzing molecular dynamics trajectories

Assessing the Performance of Traveling-salesman based Automated Path Searching (TAPS) on Complex Biomolecular Systems

Elucidating Mechanisms of Molecular Recognition Between Human Argonaute and miRNA Using Computational Approaches

Elucidating dominant pathways of the nano-particle self-assembly process.

Elucidation of the conformational dynamics of multi-body systems by construction of Markov state models

Harnessing complexity in molecular self-assembly using computer simulations.

Improving the productivity of monodisperse polyhedral cages by the rational design of kinetic self-assembly pathways

Kinetics-Controlled Amphiphile Self-Assembly Processes.

Markov State Models Reveal a Two-Step Mechanism of miRNA Loading into the Human Argonaute Protein: Selective Binding followed by Structural Re-arrangement

Molecular mechanisms of RNA polymerase II transcription elongation elucidated by kinetic network models.

Path lumping: An efficient algorithm to identify metastable path channels for conformational dynamics of multi-body systems

Role of Fluctuations in Ligand Binding Cooperativity of Membrane Receptors

Single-Molecule Investigations of Conformation Adaptation of Porphyrins on Surfaces.

Site-Mutation of Hydrophobic Core Residues Synchronically Poise Super Interleukin 2 for Signaling: Identifying Distant Structural Effects through Affordable Computations.

Structural dissection of an interaction between transcription initiation and termination factors implicated in promoter-terminator cross-talk.

TAPS: A traveling-salesman based automated path searching method for functional conformational changes of biological macromolecules

The HAMP signal relay domain adopts multiple conformational states through collective piston and tilt motions

Understanding the core of RNA interference: The dynamic aspects of Argonaute-mediated processes.

Unraveling the aggregation effect on amorphous phase AIE luminogens: a computational study