List of works - Fei He

A predicted protein-protein interaction network of the filamentous fungus Neurospora crassa

scientific article published on 16 May 2011

An Important Role for Purifying Selection in Archaeal Genome Evolution.

scientific article published in September 2017

Analysis of complete nucleotide sequences of 12 Gossypium chloroplast genomes: origin and evolution of allotetraploids

scientific article (publication date: 2012)

Badh2, encoding betaine aldehyde dehydrogenase, inhibits the biosynthesis of 2-acetyl-1-pyrroline, a major component in rice fragrance

scientific article published on 3 July 2008

Can simple codon pair usage predict protein-protein interaction?

scientific article published on 5 March 2012

Combination of specific single chain antibody variable fragment and siRNA has a synergistic inhibitory effect on the propagation of avian influenza virus H5N1 in chicken cells.

scientific article

DREISS: Using State-Space Models to Infer the Dynamics of Gene Expression Driven by External and Internal Regulatory Networks

scientific article

De novo inference of systems-level mechanistic models of development from live-imaging-based phenotype analysis.

scientific article

Differential Coexpression Analysis Reveals Extensive Rewiring of Arabidopsis Gene Coexpression in Response to Pseudomonas syringae Infection.

scientific article published on 10 October 2016

Divergent and convergent modes of interaction between wheat and Puccinia graminis f. sp. tritici isolates revealed by the comparative gene co-expression network and genome analyses

scientific article

E3 ubiquitin ligases promote progression of differentiation during C. elegans embryogenesis

scientific article

Exome sequencing highlights the role of wild-relative introgression in shaping the adaptive landscape of the wheat genome

scientific article published on 01 May 2019

Gene editing and mutagenesis reveal inter-cultivar differences and additivity in the contribution of TaGW2 homoeologues to grain size and weight in wheat

article

Gene editing of the wheat homologs of TONNEAU1-recruiting motif encoding gene affects grain shape and weight in wheat

scientific article published on 28 July 2019

Genetic analysis and morphological identification of pilus-like structures in members of the genus Bifidobacterium

scientific article published on 30 August 2011

Genomic variants affecting homoeologous gene expression dosage contribute to agronomic trait variation in allopolyploid wheat

scientific article published on 11 February 2022

KBase: The United States Department of Energy Systems Biology Knowledgebase

article

Large-Scale Public Transcriptomic Data Mining Reveals a Tight Connection between the Transport of Nitrogen and Other Transport Processes in Arabidopsis

scientific article

Large-scale atlas of microarray data reveals the distinct expression landscape of different tissues in Arabidopsis.

scientific article

Multivariable regulation of gene expression plasticity in metazoans

scientific article published on 04 December 2019

Pan- and core- network analysis of co-expression genes in a model plant.

scientific article published on 16 December 2016

PlaD: A Transcriptomics Database for Plant Defense Responses to Pathogens, Providing New Insights into Plant Immune System

scientific article published on 01 August 2018

Prediction of protein-protein interactions between Ralstonia solanacearum and Arabidopsis thaliana

scientific article published on 24 July 2011

Systematic comparison of lncRNAs with protein coding mRNAs in population expression and their response to environmental change.

scientific article

The Bifidobacterium dentium Bd1 genome sequence reflects its genetic adaptation to the human oral cavity

scientific article

The genetic architecture of genome-wide recombination rate variation in allopolyploid wheat revealed by nested association mapping

scientific article published on 19 July 2018

The prediction of protein-protein interaction networks in rice blast fungus

scientific article

Transgenerational CRISPR-Cas9 Activity Facilitates Multiplex Gene Editing in Allopolyploid Wheat

scientific article published on 01 February 2018

Whole-genome sequencing of multiple isolates of Puccinia triticina reveals asexual lineages evolving by recurrent mutations

scientific article published on 6 September 2021

List of works by Fei He

A predicted protein-protein interaction network of the filamentous fungus Neurospora crassa

An Important Role for Purifying Selection in Archaeal Genome Evolution.

Analysis of complete nucleotide sequences of 12 Gossypium chloroplast genomes: origin and evolution of allotetraploids

Badh2, encoding betaine aldehyde dehydrogenase, inhibits the biosynthesis of 2-acetyl-1-pyrroline, a major component in rice fragrance

Can simple codon pair usage predict protein-protein interaction?

Combination of specific single chain antibody variable fragment and siRNA has a synergistic inhibitory effect on the propagation of avian influenza virus H5N1 in chicken cells.

DREISS: Using State-Space Models to Infer the Dynamics of Gene Expression Driven by External and Internal Regulatory Networks

De novo inference of systems-level mechanistic models of development from live-imaging-based phenotype analysis.

Differential Coexpression Analysis Reveals Extensive Rewiring of Arabidopsis Gene Coexpression in Response to Pseudomonas syringae Infection.

Divergent and convergent modes of interaction between wheat and Puccinia graminis f. sp. tritici isolates revealed by the comparative gene co-expression network and genome analyses

E3 ubiquitin ligases promote progression of differentiation during C. elegans embryogenesis

Exome sequencing highlights the role of wild-relative introgression in shaping the adaptive landscape of the wheat genome

Gene editing and mutagenesis reveal inter-cultivar differences and additivity in the contribution of TaGW2 homoeologues to grain size and weight in wheat

Gene editing of the wheat homologs of TONNEAU1-recruiting motif encoding gene affects grain shape and weight in wheat

Genetic analysis and morphological identification of pilus-like structures in members of the genus Bifidobacterium

Genomic variants affecting homoeologous gene expression dosage contribute to agronomic trait variation in allopolyploid wheat

KBase: The United States Department of Energy Systems Biology Knowledgebase

Large-Scale Public Transcriptomic Data Mining Reveals a Tight Connection between the Transport of Nitrogen and Other Transport Processes in Arabidopsis

Large-scale atlas of microarray data reveals the distinct expression landscape of different tissues in Arabidopsis.

Multivariable regulation of gene expression plasticity in metazoans

Pan- and core- network analysis of co-expression genes in a model plant.

PlaD: A Transcriptomics Database for Plant Defense Responses to Pathogens, Providing New Insights into Plant Immune System

Prediction of protein-protein interactions between Ralstonia solanacearum and Arabidopsis thaliana

Systematic comparison of lncRNAs with protein coding mRNAs in population expression and their response to environmental change.

The Bifidobacterium dentium Bd1 genome sequence reflects its genetic adaptation to the human oral cavity

The genetic architecture of genome-wide recombination rate variation in allopolyploid wheat revealed by nested association mapping

The prediction of protein-protein interaction networks in rice blast fungus

Transgenerational CRISPR-Cas9 Activity Facilitates Multiplex Gene Editing in Allopolyploid Wheat

Whole-genome sequencing of multiple isolates of Puccinia triticina reveals asexual lineages evolving by recurrent mutations