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List of works by Namiko Mitarai

A Growing Microcolony can Survive and Support Persistent Propagation of Virulent Phages

scientific article published on 12 June 2017

A growing microcolony can survive and support persistent propagation of virulent phages.

scientific article published on 19 December 2017

Anomalous fluctuations in sliding motion of cytoskeletal filaments driven by molecular motors: model simulations

scientific article

Axelrod model: accepting or discussing

scientific article published in October 2012

Bagnold scaling, density plateau, and kinetic theory analysis of dense granular flow

scientific article published on 01 April 2005

Bifurcation of transition paths induced by coupled bistable systems ⬇️

scientific article published in June 2016

Birth and Resuscitation of (p)ppGpp Induced Antibiotic Tolerant Persister Cells

scientific article published on 15 April 2019

Characterization of phase transitions in a model ecosystem of sessile species ⬇️

scientific article

Circuit architecture explains functional similarity of bacterial heat shock responses

scientific article published on 31 October 2012

Collisional granular flow as a micropolar fluid.

scientific article published on 12 April 2002

Conditional cooperativity in toxin-antitoxin regulation prevents random toxin activation and promotes fast translational recovery

scientific article

Conditional cooperativity of toxin - antitoxin regulation can mediate bistability between growth and dormancy

scientific article

Control of ribosome traffic by position-dependent choice of synonymous codons

scientific article published on 8 October 2013

Coupled positive and negative feedbacks produce diverse gene expression patterns in colonies

scientific article published on 7 April 2015

Deterministic extinction by mixing in cyclically competing species ⬇️

scientific article

Disturbance accelerates the transition from low- to high-diversity state in a model ecosystem.

scientific article published on 4 February 2014

Dynamic Modeling of Indole Glucosinolate Hydrolysis and Its Impact on Auxin Signaling

scientific article published in 2018

Dynamic competition between transcription initiation and repression: Role of nonequilibrium steps in cell-to-cell heterogeneity. ⬇️

scientific article

Dynamic features of gene expression control by small regulatory RNAs.

scholarly article

Dynamical analysis on gene activity in the presence of repressors and an interfering promoter

scientific article published on 25 July 2008

Dynamics of the recovery from sRNA-mediated gene silencing.

scientific article

Ecosystems with mutually exclusive interactions self-organize to a state of high diversity.

scientific article published on 25 October 2011

Efficient degradation and expression prioritization with small RNAs.

scientific article published in September 2007

Emergence of diversity in a model ecosystem

scientific article

Entrainment of noise-induced and limit cycle oscillators under weak noise.

scientific article published in June 2013

Existence and construction of large stable food webs

scientific article published on 8 September 2017

Existence of log-phase <i>Escherichia coli</i> persisters and lasting memory of a starvation pulse

scientific article published in 2021

Fast Translation within the First 45 Codons Decreases mRNA Stability and Increases Premature Transcription Termination in E. coli

scientific article published on 25 January 2019

Fluid dynamics of dilatant fluids

scientific article published on 11 January 2012

Food Web Assembly Rules for Generalized Lotka-Volterra Equations

scientific article published in February 2016

From kill the winner to eliminate the winner in open phage-bacteria systems

scientific article published in August 2022

Gene Expression Changes with Minor Effects on the Population Average Have Major Effects on the Occurrence of Cells with Extreme Protein Concentrations

scientific article published on 30 January 2019

Hard-sphere limit of soft-sphere model for granular materials: stiffness dependence of steady granular flow

scientific article published on 19 February 2003

How pirate phage interferes with helper phage: Comparison of the two distinct strategies

scientific article published on 29 November 2019

Information spreading and development of cultural centers.

scientific article published on 18 May 2012

Loewner driving functions for off-critical percolation clusters.

scientific article published on 4 November 2009

Modeling rises and falls in money addicted social hierarchies

scientific article published on 26 June 2014

Modeling slow-processing of toxin messenger RNAs in type-I toxin-antitoxin systems: post-segregational killing and noise filtering

scientific article published on 04 January 2019

Modeling the spatial dynamics of culture spreading in the presence of cultural strongholds

scientific article published on 28 June 2011

Multistability with a metastable mixed state

scientific article published on 05 September 2012

Nonideal behavior of the intramolecular structure factor of dilute polymers in a theta solvent

scientific article published on 30 November 2009

Occlusion of the Ribosome Binding Site Connects the Translational Initiation Frequency, mRNA Stability and Premature Transcription Termination

scientific article published on 14 March 2017

Phage and bacteria support mutual diversity in a narrowing staircase of coexistence.

scientific article

Population Dynamics of Phage and Bacteria in Spatially Structured Habitats Using Phage λ and Escherichia coli

scientific article published on 27 May 2016

Protection of bacteriophage-sensitive by lysogens

scientific article published on 5 April 2022

Protein localization with flexible DNA or RNA.

scientific article

Rapid Curtailing of the Stringent Response by Toxin-Antitoxin Module-Encoded mRNases.

scientific article

Ribosome collisions and translation efficiency: optimization by codon usage and mRNA destabilization

scientific article published in July 2008

Spatiotemporal structure of traffic flow in a system with an open boundary

scientific article published on 01 August 2000

Speciation, diversification, and coexistence of sessile species that compete for space

scientific article (publication date: 2014)

Structural determinants of relaxation dynamics in chemical reaction networks

preprint

Sustainability of spatially distributed bacteria-phage systems

scientific article published on 21 February 2020

Sustainability of spatially distributed bacteria-phage systems

scientific article published on 13 December 2018

Switching between oscillations and homeostasis in competing negative and positive feedback motifs.

scientific article published on 21 April 2012

Synchronized switching of multiple toxin-antitoxin modules by (p)ppGpp fluctuation.

scientific article

The functional half-life of an mRNA depends on the ribosome spacing in an early coding region.

scientific article published on 19 January 2011

The generation of promoter-mediated transcriptional noise in bacteria

scientific article

Theory for the stability and regulation of epigenetic landscapes.

scientific article published on 4 June 2010

Theory of invasion extinction dynamics in minimal food webs.

scientific article published in February 2018

Three is much more than two in coarsening dynamics of cyclic competitions ⬇️

Toxins, Targets, and Triggers: An Overview of Toxin-Antitoxin Biology.

scientific article published on 21 January 2018

Valine-Induced Isoleucine Starvation in Escherichia coli K-12 Studied by Spike-In Normalized RNA Sequencing

scientific article published on 05 March 2020

Velocity correlations in dense granular shear flows: effects on energy dissipation and normal stress

scientific article published on 26 March 2007

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