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List of works by Kristýna Pluháčková

A Coiled-Coil Peptide Shaping Lipid Bilayers upon Fusion

scientific article

A Critical Comparison of Biomembrane Force Fields: Structure and Dynamics of Model DMPC, POPC, and POPE Bilayers

scientific article published on 14 April 2016

Benchmark database on isolated small peptides containing an aromatic side chain: comparison between wave function and density functional theory methods and empirical force field

scientific article published on 13 March 2008

Binding Characteristics of Sphingosine-1-Phosphate to ApoM hints to Assisted Release Mechanism via the ApoM Calyx-Opening.

scientific article published on August 2016

Biomembranes in atomistic and coarse-grained simulations.

scientific article published on 21 July 2015

Closely related, yet unique: Distinct homo- and heterodimerization patterns of G protein coupled chemokine receptors and their fine-tuning by cholesterol.

scientific article published on 12 March 2018

Critical Comparison of Biomembrane Force Fields: Protein-Lipid Interactions at the Membrane Interface

scientific article published on 7 April 2017

Dynamic Cholesterol-Conditioned Dimerization of the G Protein Coupled Chemokine Receptor Type 4.

scientific article

Dynamic processes in biological membrane mimics revealed by quasielastic neutron scattering.

scientific article published on June 2017

Exploring the Formation and the Structure of Synaptobrevin Oligomers in a Model Membrane

scientific article published on May 2016

Extension of the LOPLS-AA Force Field for Alcohols, Esters, and Monoolein Bilayers and its Validation by Neutron Scattering Experiments

scientific article published on 30 November 2015

Gasdermin-A3 pore formation propagates along variable pathways

scientific article published on 11 May 2022

Going Backward: A Flexible Geometric Approach to Reverse Transformation from Coarse Grained to Atomistic Models.

scientific article published on 21 January 2014

Guanine-aspartic acid interactions probed with IR-UV resonance spectroscopy

scientific article published on 8 March 2010

High-Throughput Simulations of Dimer and Trimer Assembly of Membrane Proteins. The DAFT Approach

scientific article published on 26 March 2015

Lipids and Phosphorylation Conjointly Modulate Complex Formation of β<sub>2</sub>-Adrenergic Receptor and β-arrestin2

scientific article published on 23 December 2021

Molecular Dynamics Simulations of Membrane Proteins

scientific article published on 01 January 2013

Native-like membrane models of E. coli polar lipid extract shed light on the importance of lipid composition complexity

scientific article published on 13 January 2021

On the importance of electron correlation effects for the intramolecular stacking geometry of a bis-thiophene derivative.

scientific article

On the nature of the surprisingly small (red) shift in the halothane...acetone complex

scientific article published in June 2007

Optimization of the OPLS-AA Force Field for Long Hydrocarbons

scientific article published on 30 March 2012

Phenylalanyl-Glycyl-Phenylalanine Tripeptide: A Model System for Aromatic−Aromatic Side Chain Interactions in Proteins

article

Spontaneous Adsorption of Coiled-Coil Model Peptides K and E to a Mixed Lipid Bilayer

scientific article published on 12 March 2015

Stabilisation energy of C6H6⋯C6X6(X = F, Cl, Br, I, CN) complexes: complete basis set limit calculations at MP2 and CCSD(T) levels

scientific article published on 19 December 2006

Structural Model of the mIgM B-Cell Receptor Transmembrane Domain From Self-Association Molecular Dynamics Simulations

scientific article published on 17 December 2018

Synaptobrevin Transmembrane Domain Dimerization Studied by Multiscale Molecular Dynamics Simulations

scientific article published on August 2015

Synaptobrevin transmembrane domain determines the structure and dynamics of the SNARE motif and the linker region

scientific article published on 4 February 2016

The Multifaceted Role of SNARE Proteins in Membrane Fusion.

scientific article published on 20 January 2017

Vicinal Amino Alcohols as Organocatalysts in Asymmetric Cross-Aldol Reaction of Ketones: Application in the Synthesis of Convolutamydine A†

scientific article published on 22 November 2007

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