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List of works by Alejandro Fernández Villaverde

A consensus approach for estimating the predictive accuracy of dynamic models in biology

scientific article

A cooperative strategy for parameter estimation in large scale systems biology models.

scientific article

A generalized Fisher equation and its utility in chemical kinetics

scientific article

Benchmarking optimization methods for parameter estimation in large kinetic models.

scientific article published in March 2019

BioPreDyn-bench: a suite of benchmark problems for dynamic modelling in systems biology

scientific article

Data-driven reverse engineering of signaling pathways using ensembles of dynamic models

scientific article

Dynamical compensation and structural identifiability of biological models: Analysis, implications, and reconciliation ⬇️

scientific article published on 29 November 2017

Enabling network inference methods to handle missing data and outliers

scientific article

Full observability and estimation of unknown inputs, states and parameters of nonlinear biological models

scientific article published on 03 July 2019

MEIGO: an open-source software suite based on metaheuristics for global optimization in systems biology and bioinformatics

scientific article

MIDER: network inference with mutual information distance and entropy reduction

scientific article (publication date: 2014)

Metabolic engineering with multi-objective optimization of kinetic models

scientific article published on 27 January 2016

Multi-criteria optimization of regulation in metabolic networks

scientific article

On testing structural identifiability by a simple scaling method: Relying on scaling symmetries can be misleading

scientific article published on 14 October 2021

On the relationship between sloppiness and identifiability

scientific article published on 24 October 2016

PREMER: a Tool to Infer Biological Networks

scientific article published on 4 October 2017

Parameter identifiability analysis and visualization in large-scale kinetic models of biosystems

scientific article

Reverse engineering and identification in systems biology: strategies, perspectives and challenges

scientific article

Reverse engineering cellular networks with information theoretic methods.

scientific article published on 10 May 2013

Structural Identifiability of Dynamic Systems Biology Models.

scientific article

Symmetries in Dynamic Models of Biological Systems: Mathematical Foundations and Implications

scientific article published in 2022

Use of a generalized fisher equation for global optimization in chemical kinetics

scientific article published on 14 July 2011

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