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List of works by Lex Nederbragt

A genome-wide analysis of nonribosomal peptide synthetase gene clusters and their peptides in a Planktothrix rubescens strain

scientific article

A lophotrochozoan twist gene is expressed in the ectomesoderm of the gastropod mollusk Patella vulgata

scientific article published in September 2002

A novel totivirus and piscine reovirus (PRV) in Atlantic salmon (Salmo salar) with cardiomyopathy syndrome (CMS).

scientific article

A solid-phase method for preparing human DNA from urine for diagnostic purposes

scientific article published on 19 March 2009

Alterations of microbiota in urine from women with interstitial cystitis

scientific article

An improved genome assembly uncovers prolific tandem repeats in Atlantic cod

scientific article

An improved genome assembly uncovers prolific tandem repeats in Atlantic cod

article

An improved version of the Atlantic cod genome and advancements in functional genomics: implications for the future of cod farming

Assessing diversity of the female urine microbiota by high throughput sequencing of 16S rDNA amplicons

scientific article

Characterisation of two snail genes in the gastropod mollusc Patella vulgata. Implications for understanding the ancestral function of the snail-related genes in Bilateria

scientific article published on 18 April 2002

Complete genome sequence of the commensal Enterococcus faecalis 62, isolated from a healthy Norwegian infant

scientific article published on 11 March 2011

Coordinates and Intervals in Graph-based Reference Genomes

Draft genomes of clinical Bacillus cereus isolates AH725 and B06.009 closely related to reference strains ATCC 14579 and ATCC 10987

Environmental microbiology through the lens of high-throughput DNA sequencing: synopsis of current platforms and bioinformatics approaches

scientific article published on 28 July 2012

Evolution of the immune system influences speciation rates in teleost fishes

scientific article published on 22 August 2016

Evolutionary biology: hedgehog crosses the snail's midline

scientific article published in June 2002

Evolutionary redesign of the Atlantic cod (Gadus morhua L.) Toll-like receptor repertoire by gene losses and expansions

scientific article published on 29 April 2016

Expression of Patella vulgata orthologs of engrailed and dpp-BMP2/4 in adjacent domains during molluscan shell development suggests a conserved compartment boundary mechanism

scientific article

From green to red: horizontal gene transfer of the phycoerythrin gene cluster between Planktothrix strains

scientific article

GSuite HyperBrowser: integrative analysis of dataset collections across the genome and epigenome

Genome evolution of a tertiary dinoflagellate plastid

scientific article

Genome fragmentation is not confined to the peridinin plastid in dinoflagellates

scientific article

Genomic architecture of codfishes featured by expansions of innate immune genes and short tandem repeats

article

Genomic characterization of the Atlantic cod sex-locus

scientific article published on 08 August 2016

Genomic organization and gene expression of the multiple globins in Atlantic cod: conservation of globin-flanking genes in chordates infers the origin of the vertebrate globin clusters

scientific article

Good enough practices in scientific computing ⬇️

scientific article

Graph Peak Caller: Calling ChIP-seq peaks on graph-based reference genomes

scientific article published on 19 February 2019

Graph Peak Caller: calling ChIP-Seq Peaks on Graph-based Reference Genomes

Hybrid speciation through sorting of parental incompatibilities in Italian sparrows

scientific article

Identification and Quantification of Genomic Repeats and Sample Contamination in Assemblies of 454 Pyrosequencing Reads

article published in 2010

Improved metagenome assemblies and taxonomic binning using long-read circular consensus sequence data

scientific article

Large-scale sequence analyses of Atlantic cod.

scientific article published on 05 April 2009

Multiple-locus variable-number tandem repeat analysis of Legionella pneumophila using multi-colored capillary electrophoresis

scientific article published on 23 February 2008

Novel and conserved roles for orthodenticle/ otx and orthopedia/ otp orthologs in the gastropod mollusc Patella vulgata

scientific article published on 12 June 2002

NucBreak: Location of structural errors in a genome assembly by using paired-end Illumina reads

On the middle ground between open source and commercial software - the case of the Newbler program

scientific article published on 29 April 2014

Palindromic sequence artifacts generated during next generation sequencing library preparation from historic and ancient DNA.

scientific article

Pathogens in Urine from a Female Patient with Overactive Bladder Syndrome Detected by Culture-independent High Throughput Sequencing: A Case Report

scientific article

Ten quick tips for teaching with participatory live coding

scientific article published on 10 September 2020

The Atlantic salmon genome provides insights into rediploidization

scientific article

The Grayling Genome Reveals Selection on Gene Expression Regulation after Whole-Genome Duplication

article

The chloroplast genome of the diatom Seminavis robusta: new features introduced through multiple mechanisms of horizontal gene transfer

scientific article

The genome sequence of Atlantic cod reveals a unique immune system

scientific article published on 10 August 2011

The genomic mosaicism of hybrid speciation

scientific article

The grayling genome reveals selection on gene expression regulation after whole genome duplication

article

The khmer software package: enabling efficient nucleotide sequence analysis

scientific article published on 25 September 2015

The new era of genome sequencing using high-throughput sequencing technology: generation of the first version of the Atlantic cod genome

The stringlike genes of the limpet Patella vulgata

scientific article published in June 1996

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