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List of works by Yana Bromberg

Assessing computational predictions of the phenotypic effect of cystathionine-beta-synthase variants

scientific article published on 03 September 2019

Assessment of methods for predicting the effects of PTEN and TPMT protein variants

scientific article published on 03 July 2019

Assessment of predicted enzymatic activity of α-N-acetylglucosaminidase variants of unknown significance for CAGI 2016

scientific article published on 01 September 2019

Association between variants of PRDM1 and NDP52 and Crohn's disease, based on exome sequencing and functional studies

scientific article published on 25 April 2013

Association of functionally significant Melanocortin-4 but not Melanocortin-3 receptor mutations with severe adult obesity in a large North American case-control study

scientific article published on 17 December 2008

Better prediction of functional effects for sequence variants

scientific article published on 18 June 2015

Bioinformatics for personal genome interpretation

scientific article (publication date: July 2012)

Building a Genome Analysis Pipeline to Predict Disease Risk and Prevent Disease ⬇️

scientific article published on 05 August 2013

COMPUTATIONAL APPROACHES TO STUDY MICROBES AND MICROBIOMES.

scientific article published in January 2016

Chapter 15: Disease Gene Prioritization ⬇️

scientific article published on April 25, 2013

Collective judgment predicts disease-associated single nucleotide variants

scientific article

Common sequence variants affect molecular function more than rare variants?

scientific article

Comparative genomic and physiological analysis provides insights into the role of Acidobacteria in organic carbon utilization in Arctic tundra soils

scientific article published on 30 April 2012

Comprehensive in silico mutagenesis highlights functionally important residues in proteins

scientific article

Computational prediction shines light on type III secretion origins

scientific article published on 07 October 2016

Conserved amino acids within the adenovirus 2 E3/19K protein differentially affect downregulation of MHC class I and MICA/B proteins

scientific article published on 30 November 2009

Correlating protein function and stability through the analysis of single amino acid substitutions.

scientific article

Disease-related mutations predicted to impact protein function

scientific article

Evolutionary history of redox metal-binding domains across the tree of life

scientific article

Function-based assessment of structural similarity measurements using metal co-factor orientation

scientific article published on 22 November 2013

Functional Basis of Microorganism Classification

scientific article published on 28 August 2015

Functional analyses of variants reveal a significant role for dominant negative and common alleles in oligogenic Bardet-Biedl syndrome

scientific article

Identifying mutation-driven changes in gene functionality that lead to venous thromboembolism

scientific article published on 03 July 2019

In silico mutagenesis: a case study of the melanocortin 4 receptor

scientific article

Inferring Potential Cancer Driving Synonymous Variants

scientific article published on 27 April 2022

Mapping of Mcs30, a new mammary carcinoma susceptibility quantitative trait locus (QTL30) on rat chromosome 12: identification of fry as a candidate Mcs gene

scientific article (publication date: 2013)

MuD: an interactive web server for the prediction of non-neutral substitutions using protein structural data

scientific article

MuD: an interactive web server for the prediction of non-neutral substitutions using protein structural data.

scientific article published on 23 November 2010

Neutral and weakly nonneutral sequence variants may define individuality

scientific article published on 12 August 2013

New in protein structure and function annotation: hotspots, single nucleotide polymorphisms and the 'Deep Web'.

scientific article

News from the protein mutability landscape

scientific article published on 26 July 2013

Performance of in silico tools for the evaluation of p16INK4a (CDKN2A) variants in CAGI.

scientific article

Positional cloning of "Lisch-Like", a candidate modifier of susceptibility to type 2 diabetes in mice

scientific article

PredictProtein - Predicting Protein Structure and Function for 29 Years

scientific article published on 11 May 2021

PredictProtein--an open resource for online prediction of protein structural and functional features

scientific article

Predicted Molecular Effects of Sequence Variants Link to System Level of Disease

scientific article

Protein function in precision medicine: deep understanding with machine learning

scientific article

Quantum correlations in two-particle Anderson localization

scientific article published on 14 October 2010

SNAP predicts effect of mutations on protein function

scientific article

SNAP: predict effect of non-synonymous polymorphisms on function

scientific article

SNP-SIG Meeting 2011: identification and annotation of SNPs in the context of structure, function, and disease

scientific article

SNPdbe: constructing an nsSNP functional impacts database

scientific article

Snow microbiome functional analyses reveal novel aspects of microbial metabolism of complex organic compounds

scientific article published on 06 August 2020

Ten simple rules for drawing scientific comics

scientific article published on 4 January 2018

The young PI buzz: learning from the organizers of the Junior Principal Investigator Meeting at ISMB-ECCB 2013.

scientific article published on 7 November 2013

Thoughts from SNP-SIG 2012: future challenges in the annotation of genetic variations

scientific article

TrAnsFuSE refines the search for protein function: oxidoreductases

scientific article published on 5 April 2012

VarI-SIG 2014--From SNPs to variants: interpreting different types of genetic variants

scientific article published on 18 June 2015

VarI-SIG 2015: methods for personalized medicine - the role of variant interpretation in research and diagnostics

scientific article

What went wrong with variant effect predictor performance for the PCM1 challenge

scientific article published on 03 July 2019

Whole exome sequencing identifies novel candidate genes that modify chronic obstructive pulmonary disease susceptibility

scientific article

clubber: removing the bioinformatics bottleneck in big data analyses

scientific article

funtrp: identifying protein positions for variation driven functional tuning

scientific article published on 01 December 2019

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