List of works - Gregory R Grant

A broad-spectrum lipidomics screen of antiinflammatory drug combinations in human blood

scientific article published on August 2016

A comparison of Illumina and Ion Torrent sequencing platforms in the context of differential gene expression

scientific article published on 10 August 2017

A flexible two-stage procedure for identifying gene sets that are differentially expressed

scientific article published on 11 February 2009

A practical false discovery rate approach to identifying patterns of differential expression in microarray data

scientific article

Abstract 133: Transcriptional and Cell Cycle Alterations Distinguish Aging of Primary Human Adipose-Derived Stem Cells from Fibroblasts.

scientific article published in April 2017

Analysis and management of microarray gene expression data.

scientific article

Assessing the significance of conserved genomic aberrations using high resolution genomic microarrays

scientific article

Benchmark analysis of algorithms for determining and quantifying full-length mRNA splice forms from RNA-seq data

scientific article

Biochemical, molecular and behavioral phenotypes of Rab3A mutations in the mouse

scientific article

Cell selective cardiovascular biology of microsomal prostaglandin E synthase-1.

scientific article published on 30 November 2012

Cell-specific determinants of peroxisome proliferator-activated receptor gamma function in adipocytes and macrophages

scientific article published on 22 February 2010

Characterizing the "POAGome": A bioinformatics-driven approach to primary open-angle glaucoma

scientific article published on 18 February 2017

Coexisting proinflammatory and antioxidative endothelial transcription profiles in a disturbed flow region of the adult porcine aorta.

scholarly article

Comparative analysis of RNA-Seq alignment algorithms and the RNA-Seq unified mapper (RUM).

scientific article

Comparison of different labeling methods for two-channel high-density microarray experiments

scientific article

Considerations for RNA-seq analysis of circadian rhythms

scientific article published on 26 December 2014

Deep sequencing the circadian and diurnal transcriptome of Drosophila brain

scientific article

Detection theory in identification of RNA-DNA sequence differences using RNA-sequencing

scientific article

Discovery approaches to UPR in athero-susceptible endothelium in vivo.

scientific article published on January 2011

Drug Resistance and Pseudoresistance: An Unintended Consequence of Enteric Coating Aspirin

scientific article

Erythropoietin upregulation in pulmonary arterial hypertension

scientific article

EuPathDB: a portal to eukaryotic pathogen databases

scientific article

EuPathDB: the eukaryotic pathogen database

scientific article

Fidelity and enhanced sensitivity of differential transcription profiles following linear amplification of nanogram amounts of endothelial mRNA.

scientific article published on 16 April 2003

Generation of patterns from gene expression data by assigning confidence to differentially expressed genes

scientific article

GiardiaDB and TrichDB: integrated genomic resources for the eukaryotic protist pathogens Giardia lamblia and Trichomonas vaginalis

scientific article

Histone posttranslational modifications predict specific alternative exon subtypes in mammalian brain

scientific article

Human microRNA-155 on chromosome 21 differentially interacts with its polymorphic target in the AGTR1 3' untranslated region: a mechanism for functional single-nucleotide polymorphisms related to phenotypes

scientific article

Hypercholesterolemia induces side-specific phenotypic changes and peroxisome proliferator-activated receptor-gamma pathway activation in swine aortic valve endothelium

scientific article published on 19 November 2009

IVT-seq reveals extreme bias in RNA sequencing

scientific article

Integrative genomics identifies distinct molecular classes of neuroblastoma and shows that multiple genes are targeted by regional alterations in DNA copy number

scientific article published on 01 June 2006

Investigation of the functional role of human Interleukin-8 gene haplotypes by CRISPR/Cas9 mediated genome editing

scientific article published on 08 August 2016

Maintaining data integrity in microarray data management.

scientific article published in December 2003

Microsomal prostaglandin e2 synthase-1 modulates the response to vascular injury

scientific article

Molecular karyotype of sporadic unilateral retinoblastoma tumors.

scientific article published on July 2009

Myeloid Cell COX-2 deletion reduces mammary tumor growth through enhanced cytotoxic T-lymphocyte function

scientific article

Obesity in mice with adipocyte-specific deletion of clock component Arntl.

scientific article

PlasmoDB: a functional genomic database for malaria parasites

scientific article (publication date: 2009)

PlasmoDB: the Plasmodium genome resource. A database integrating experimental and computational data

scientific article

PlasmoDB: the Plasmodium genome resource. An integrated database providing tools for accessing, analyzing and mapping expression and sequence data (both finished and unfinished).

scientific article

Prelesional arterial endothelial phenotypes in hypercholesterolemia: universal ABCA1 upregulation contrasts with region-specific gene expression in vivo

scientific article

Propagation of adipogenic signals through an epigenomic transition state.

scientific article

RAD and the RAD Study-Annotator: an approach to collection, organization and exchange of all relevant information for high-throughput gene expression studies.

scientific article published on 22 January 2004

Regional determinants of arterial endothelial phenotype dominate the impact of gender or short-term exposure to a high-fat diet.

scientific article published in June 2005

Response to letters regarding article, "Drug resistance and pseudoresistance: an unintended consequence of enteric coating aspirin"

scientific article published on 01 September 2013

STAC: A method for testing the significance of DNA copy number aberrations across multiple array-CGH experiments

scientific article

Side-specific expression of activated leukocyte adhesion molecule (ALCAM; CD166) in pathosusceptible regions of swine aortic valve endothelium

scientific article published on March 2011

Significance testing for direct identity-by-descent mapping

scientific article published in September 1999

Simulation-based comprehensive benchmarking of RNA-seq aligners.

scientific article published on 12 December 2016

Spatial heterogeneity of endothelial phenotypes correlates with side-specific vulnerability to calcification in normal porcine aortic valves.

scientific article

Systematic evaluation of spliced alignment programs for RNA-seq data

scientific article

The Plasmodium genome database

scientific article published in Nature

Timing of expression of the core clock gene Bmal1 influences its effects on aging and survival.

scientific article published on 3 February 2016

Transcriptional and Cell Cycle Alterations Mark Aging of Primary Human Adipose-Derived Stem Cells

scientific article published on 17 February 2017

Transcriptional pausing controls a rapid antiviral innate immune response in Drosophila

scientific article

Transcriptome analyses of the human retina identify unprecedented transcript diversity and 3.5 Mb of novel transcribed sequence via significant alternative splicing and novel genes

scientific article

Transcriptome analyses to investigate the pathogenesis of RNA splicing factor retinitis pigmentosa.

scientific article published on January 2012

TriTrypDB: a functional genomic resource for the Trypanosomatidae

scientific article

Vascular COX-2 modulates blood pressure and thrombosis in mice.

scientific article

List of works by Gregory R Grant

A broad-spectrum lipidomics screen of antiinflammatory drug combinations in human blood

A comparison of Illumina and Ion Torrent sequencing platforms in the context of differential gene expression

A flexible two-stage procedure for identifying gene sets that are differentially expressed

A practical false discovery rate approach to identifying patterns of differential expression in microarray data

Abstract 133: Transcriptional and Cell Cycle Alterations Distinguish Aging of Primary Human Adipose-Derived Stem Cells from Fibroblasts.

Analysis and management of microarray gene expression data.

Assessing the significance of conserved genomic aberrations using high resolution genomic microarrays

Benchmark analysis of algorithms for determining and quantifying full-length mRNA splice forms from RNA-seq data

Biochemical, molecular and behavioral phenotypes of Rab3A mutations in the mouse

Cell selective cardiovascular biology of microsomal prostaglandin E synthase-1.

Cell-specific determinants of peroxisome proliferator-activated receptor gamma function in adipocytes and macrophages

Characterizing the "POAGome": A bioinformatics-driven approach to primary open-angle glaucoma

Coexisting proinflammatory and antioxidative endothelial transcription profiles in a disturbed flow region of the adult porcine aorta.

Comparative analysis of RNA-Seq alignment algorithms and the RNA-Seq unified mapper (RUM).

Comparison of different labeling methods for two-channel high-density microarray experiments

Considerations for RNA-seq analysis of circadian rhythms

Deep sequencing the circadian and diurnal transcriptome of Drosophila brain

Detection theory in identification of RNA-DNA sequence differences using RNA-sequencing

Discovery approaches to UPR in athero-susceptible endothelium in vivo.

Drug Resistance and Pseudoresistance: An Unintended Consequence of Enteric Coating Aspirin

Erythropoietin upregulation in pulmonary arterial hypertension

EuPathDB: a portal to eukaryotic pathogen databases

EuPathDB: the eukaryotic pathogen database

Fidelity and enhanced sensitivity of differential transcription profiles following linear amplification of nanogram amounts of endothelial mRNA.

Generation of patterns from gene expression data by assigning confidence to differentially expressed genes

GiardiaDB and TrichDB: integrated genomic resources for the eukaryotic protist pathogens Giardia lamblia and Trichomonas vaginalis

Histone posttranslational modifications predict specific alternative exon subtypes in mammalian brain

Human microRNA-155 on chromosome 21 differentially interacts with its polymorphic target in the AGTR1 3' untranslated region: a mechanism for functional single-nucleotide polymorphisms related to phenotypes

Hypercholesterolemia induces side-specific phenotypic changes and peroxisome proliferator-activated receptor-gamma pathway activation in swine aortic valve endothelium

IVT-seq reveals extreme bias in RNA sequencing

Integrative genomics identifies distinct molecular classes of neuroblastoma and shows that multiple genes are targeted by regional alterations in DNA copy number

Investigation of the functional role of human Interleukin-8 gene haplotypes by CRISPR/Cas9 mediated genome editing

Maintaining data integrity in microarray data management.

Microsomal prostaglandin e2 synthase-1 modulates the response to vascular injury

Molecular karyotype of sporadic unilateral retinoblastoma tumors.

Myeloid Cell COX-2 deletion reduces mammary tumor growth through enhanced cytotoxic T-lymphocyte function

Obesity in mice with adipocyte-specific deletion of clock component Arntl.

PlasmoDB: a functional genomic database for malaria parasites

PlasmoDB: the Plasmodium genome resource. A database integrating experimental and computational data

PlasmoDB: the Plasmodium genome resource. An integrated database providing tools for accessing, analyzing and mapping expression and sequence data (both finished and unfinished).

Prelesional arterial endothelial phenotypes in hypercholesterolemia: universal ABCA1 upregulation contrasts with region-specific gene expression in vivo

Propagation of adipogenic signals through an epigenomic transition state.

RAD and the RAD Study-Annotator: an approach to collection, organization and exchange of all relevant information for high-throughput gene expression studies.

Regional determinants of arterial endothelial phenotype dominate the impact of gender or short-term exposure to a high-fat diet.

Response to letters regarding article, "Drug resistance and pseudoresistance: an unintended consequence of enteric coating aspirin"

STAC: A method for testing the significance of DNA copy number aberrations across multiple array-CGH experiments

Side-specific expression of activated leukocyte adhesion molecule (ALCAM; CD166) in pathosusceptible regions of swine aortic valve endothelium

Significance testing for direct identity-by-descent mapping

Simulation-based comprehensive benchmarking of RNA-seq aligners.

Spatial heterogeneity of endothelial phenotypes correlates with side-specific vulnerability to calcification in normal porcine aortic valves.

Systematic evaluation of spliced alignment programs for RNA-seq data

The Plasmodium genome database

Timing of expression of the core clock gene Bmal1 influences its effects on aging and survival.

Transcriptional and Cell Cycle Alterations Mark Aging of Primary Human Adipose-Derived Stem Cells

Transcriptional pausing controls a rapid antiviral innate immune response in Drosophila

Transcriptome analyses of the human retina identify unprecedented transcript diversity and 3.5 Mb of novel transcribed sequence via significant alternative splicing and novel genes

Transcriptome analyses to investigate the pathogenesis of RNA splicing factor retinitis pigmentosa.

TriTrypDB: a functional genomic resource for the Trypanosomatidae

Vascular COX-2 modulates blood pressure and thrombosis in mice.