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List of works by Kim Sneppen

A Growing Microcolony can Survive and Support Persistent Propagation of Virulent Phages

scientific article published on 12 June 2017

A cross-immunization model for the extinction of old influenza strains.

scientific article published on 13 May 2016

A mathematical model for transcriptional interference by RNA polymerase traffic in Escherichia coli

scientific article published on 23 December 2004

A minimal model for multiple epidemics and immunity spreading

scientific article

A simple histone code opens many paths to epigenetics

scientific article

A simple model for self-organization of bipartite networks

scientific article published in August 2004

Airborne Pathogens in a Heterogeneous World: Superspreading & Mitigation

scientific article published on 27 October 2020

Angular patterns from fragments produced in central heavy-ion collisions

scientific article published on 01 July 1994

Avalanches, scaling, and coherent noise

scientific article published on 01 December 1996

Axelrod model: accepting or discussing

scientific article published in October 2012

Barriers and silencers: a theoretical toolkit for control and containment of nucleosome-based epigenetic states

scientific article published on 20 October 2011

COVID-19 Superspreading Suggests Mitigation by Social Network Modulation

scientific article published on 15 March 2021

COVID-19 superspreading in cities versus the countryside

scientific article published on 7 September 2020

Cascade simulation of a Delta isobar propagating in a nucleus

scientific article published on 01 July 1994

Clonal selection prevents tragedy of the commons when neighbors compete in a rock-paper-scissors game

scientific article

Coarse graining of microscopic variables in the minimal information approach

scientific article published on 01 January 1989

Coexistence of phage and bacteria on the boundary of self-organized refuges

scientific article

Collaboration between CpG sites is needed for stable somatic inheritance of DNA methylation states

scientific article

Colored activity in self-organized critical interface dynamics

scientific article published on 01 July 1993

Combinatorics of feedback in cellular uptake and metabolism of small molecules

scholarly article

Communication Boundaries in Networks

scientific article published in Physical Review Letters

Competition between diffusion and fragmentation: an important evolutionary process of nature.

scientific article published on 23 December 2003

Computational architecture of the yeast regulatory network

scientific article published on 09 November 2005

Conditional cooperativity in toxin-antitoxin regulation prevents random toxin activation and promotes fast translational recovery

scientific article

Conditional cooperativity of toxin - antitoxin regulation can mediate bistability between growth and dormancy

scientific article

Cooperative stabilization of the SIR complex provides robust epigenetic memory in a model of SIR silencing in Saccharomyces cerevisiae.

scientific article

Correlations in Networks Associated to Preferential Growth

scientific article published in January 2005

DNA methylation in human epigenomes depends on local topology of CpG sites

scientific article published on 29 February 2016

DNA supercoiling enhances cooperativity and efficiency of an epigenetic switch

scientific article published on 07 October 2013

Deep inelastic collision followed by disassembly in the reaction 136Xe+209Bi at Elab/A=28.2 MeV

scientific article published on 01 July 1993

Degree landscapes in scale-free networks

scientific article published on 26 September 2006

Differences in social activity increase efficiency of contact tracing

scientific article published in 2021

Differentiation of developing olfactory neurons analysed in terms of coupled epigenetic landscapes

scientific article (publication date: May 2013)

Diffusion Retardation by Binding of Tobramycin in an Alginate Biofilm Model

scientific article

Direct and indirect effects in the regulation of overlapping promoters

scientific article

Distributions of self-interactions and voids in (1+1)-dimensional directed percolation

scientific article published on 01 September 1995

Diversity Waves in Collapse-Driven Population Dynamics ⬇️

scientific article published on 14 September 2015

Diversity waves in collapse-driven population dynamics

scientific article published on 15 July 2015

Dominant negative autoregulation limits steady-state repression levels in gene networks

scientific article published on 08 May 2009

Dynamic competition between transcription initiation and repression: Role of nonequilibrium steps in cell-to-cell heterogeneity. ⬇️

scientific article

Dynamic features of gene expression control by small regulatory RNAs.

scholarly article

Dynamic scaling and crossover analysis for the Kuramoto-Sivashinsky equation.

scientific article published in December 1992

Dynamical analysis on gene activity in the presence of repressors and an interfering promoter

scientific article published on 25 July 2008

Dynamics of the recovery from sRNA-mediated gene silencing.

scientific article

Dynamics of uptake and metabolism of small molecules in cellular response systems

scientific article

Economy of operon formation: cotranscription minimizes shortfall in protein complexes

scientific article

Ecosystems with mutually exclusive interactions self-organize to a state of high diversity.

scientific article published on 25 October 2011

Effect of supercoiling on the λ switch.

scientific article published on January 2014

Efficient degradation and expression prioritization with small RNAs.

scientific article published in September 2007

Emergence and decline of scientific paradigms

scientific article published on 02 February 2011

Emergence of diversity in a model ecosystem

scientific article

Epigenetics as a first exit problem

scientific article published on 08 January 2002

Establishment of heterochromatin in domain-size-dependent bursts

scientific article published on 7 April 2021

Estimating cost-benefit of quarantine length for COVID-19 mitigation

scientific article published on 14 April 2020

Evolution as a self-organized critical phenomenon

scientific article (publication date: 23 May 1995)

Fear and its implications for stock markets

scientific article published in May 2007

Fluctuations and intermittency in multifragmentation processes.

scientific article

Food Web Assembly Rules for Generalized Lotka-Volterra Equations

scientific article published in February 2016

From kill the winner to eliminate the winner in open phage-bacteria systems

scientific article published in August 2022

Frustration driven stock market dynamics: Leverage effect and asymmetry

scientific article published in September 2007

Functional alignment of regulatory networks: a study of temperate phages

scientific article

Gene duplication models for directed networks with limits on growth

scientific article published on 16 November 2007

Genetic regulation of fluxes: iron homeostasis of Escherichia coli

scientific article

Genetic regulatory networks that count to 3.

scientific article published on 6 April 2013

Heat capacity of a Fermi system and multifragmentation of nuclei

scientific article published on 01 August 1994

Heterogeneity is essential for contact tracing

scientific article published on 7 June 2020

Hide-and-seek on complex networks

Hierarchy measures in complex networks

scientific article published on 29 April 2004

Hitchhiking, collapse, and contingency in phage infections of migrating bacterial populations

scientific article published on 01 May 2020

Hydrogen Bonds in Polymer Folding

scientific article published in Physical Review Letters

ICM cells can be partitioned robustly through transient synchronization using secreted FGF4

scientific article

Immune Heterogeneity and Epistasis Explain Punctuated Evolution of SARS-CoV-2

scientific article published on 29 July 2022

Information spreading and development of cultural centers.

scientific article published on 18 May 2012

Intermittent dynamics and self-organized depinning in propagating fronts

scientific article published on 01 April 1994

Isobaric ratios of fragments emitted in incomplete fusion reactions

scientific article published on 01 May 1995

Key players in the genetic switch of bacteriophage TP901-1

scientific article

Kolmogorov scaling from random force fields

scientific article published on 24 September 2008

Labyrinthine clustering in a spatial rock-paper-scissors ecosystem.

scientific article published on 8 April 2013

Large radial flow in nucleus-nucleus collisions

scientific article published on 01 May 1993

Localization of denaturation bubbles in random DNA sequences

scientific article

Locally self-organized quasicritical percolation in a multiple-disease model

scientific article published on 30 September 2011

Lockdowns exert selection pressure on overdispersion of SARS-CoV-2 variants

scientific article published in September 2022

Lockdowns exert selection pressure on overdispersion of SARS-CoV-2 variants

scientific article published on 6 July 2021

Longevity of orders is related to the longevity of their constituent genera rather than genus richness

scientific article

Mean field theory for a simple model of evolution

scientific article published on 01 December 1993

Mechanism for nuclear disassembly of the Ar+Th and Pb+Au systems at intermediate energies

scientific article published on 01 July 1992

Minimal gene regulatory circuits for a lysis-lysogeny choice in the presence of noise

scientific article

Minimal gene regulatory circuits that can count like bacteriophage lambda

scientific article published on 28 September 2009

Minimal model of spiky oscillations in NF-kappaB signaling.

scholarly article

Mismatch repair at stop codons is directed independent of GATC methylation on the Escherichia coli chromosome.

scientific article published on 05 December 2014

Model to Link Cell Shape and Polarity with Organogenesis

scientific article published on 11 January 2020

Model to link cell shape and polarity with organogenesis

scientific article published on 11 July 2019

Modeling dynamics of information networks

scientific article published on 24 October 2003

Modeling of the genetic switch of bacteriophage TP901-1: A heteromer of CI and MOR ensures robust bistability

scientific article published on 9 September 2009

Modeling proteasome dynamics in Parkinson's disease

scientific article published in May 2009

Modeling rises and falls in money addicted social hierarchies

scientific article published on 26 June 2014

Modeling self-organization of communication and topology in social networks

scientific article published on 17 July 2006

Modeling the spatial dynamics of culture spreading in the presence of cultural strongholds

scientific article published on 28 June 2011

Modeling the two-hybrid detector: experimental bias on protein interaction networks.

scientific article

Modelling transcriptional interference and DNA looping in gene regulation.

scientific article

Modelling value bubbles in an attention based economy

scientific article published in March 2020

Models of Life

scientific article published in 2017

Modularity and extreme edges of the internet

scientific article published on 11 April 2003

Multidiffusion in critical dynamics of strings and membranes

scientific article published on 01 January 1994

Multiplicity distributions for the reaction 40Ar on 27Al calculated in the statistical multifragmentation model

scientific article published on 01 March 1989

Multistability with a metastable mixed state

scientific article published on 05 September 2012

Nanog, Oct4 and Tet1 interplay in establishing pluripotency

scientific article published on 5 May 2016

Navigating networks with limited information

scientific article published on 14 June 2005

Network models of phage-bacteria coevolution.

scientific article published on 8 December 2006

Networks and Cities: An Information Perspective

scientific article published in Physical Review Letters

Nucleation and spreading of a heterochromatic domain in fission yeast.

scientific article

Nucleosome dynamics and maintenance of epigenetic states of CpG islands

scientific article published on 28 June 2016

One hub-one process: a tool based view on regulatory network topology

scientific article

Organizational structure and communication networks in a university environment ⬇️

scientific article published on July 2, 2010

Oscillations and temporal signalling in cells.

scientific article published on 18 May 2007

Overdispersion in COVID-19 increases the effectiveness of limiting nonrepetitive contacts for transmission control

scientific article published on 6 April 2021

Pancreatic α and β cells are globally phase-locked

scientific article published on 3 December 2021

Pathway identification by network pruning in the metabolic network of Escherichia coli

scientific article published on 6 October 2009

Pathways in two-state protein folding.

scientific article published on November 2000

Phage and bacteria support mutual diversity in a narrowing staircase of coexistence.

scientific article

Population Dynamics of Phage and Bacteria in Spatially Structured Habitats Using Phage λ and Escherichia coli

scientific article published on 27 May 2016

Protection of bacteriophage-sensitive by lysogens

scientific article published on 5 April 2022

Protein interaction networks beyond artifacts

scientific article published on 01 October 2002

Protein localization with flexible DNA or RNA.

scientific article

Punctuated equilibrium and criticality in a simple model of evolution

scientific article

Quality control system response to stochastic growth of amyloid fibrils

scientific article published on 21 March 2013

Quantifying the benefits of translation regulation in the unfolded protein response.

scientific article published in December 2004

Quorum sensing regulation in Aeromonas hydrophila

scientific article published on 11 January 2010

Rapid Curtailing of the Stringent Response by Toxin-Antitoxin Module-Encoded mRNases.

scientific article

Regime Shifts in a Phage-Bacterium Ecosystem and Strategies for Its Control

scientific article published on 05 November 2019

Regime shifts in a phage-bacterial ecosystem and strategies for its control

scientific article published on 8 October 2019

Relation of intracellular signal levels and promoter activities in the gal regulon of Escherichia coli

scientific article published on 23 June 2009

Restriction modification systems as engines of diversity

scientific article published on 2 June 2015

Ribosome collisions and translation efficiency: optimization by codon usage and mRNA destabilization

scientific article published in July 2008

Searchability of networks

scientific article published on 17 October 2005

Self organized scale-free networks from merging and regeneration

scientific article published in February 2005

Self-assembly of information in networks

scientific article published in June 2006

Self-organization of structures and networks from merging and small-scale fluctuations

Severe population collapses and species extinctions in multi-host epidemic dynamics

scientific article published on 21 April 2017

Short-range growth inhibitory signals from the epithelium can drive non-stereotypic branching in the pancreas

scientific article published on 23 February 2016

Signal integration in the galactose network of Escherichia coli

scientific article published on 01 July 2007

Simplified models of biological networks

scientific article published on January 2010

Single-cell Analysis of λ Immunity Regulation

scientific article published in November 2003

Sneppen and Jensen reply

scientific article published on 01 June 1993

Spatial model of Ebola outbreaks contained by behavior change

scientific article published on 14 March 2022

Spatial structure and Lamarckian adaptation explain extreme genetic diversity at CRISPR locus

scientific article

Speciation, diversification, and coexistence of sessile species that compete for space

scientific article (publication date: 2014)

Specific contacts of the -35 region of the galP1 promoter by RNA polymerase inhibit GalR-mediated DNA looping repression

scientific article

Specificity and stability in topology of protein networks

scientific article

Spontaneous nucleation of microtubules

scientific article published on 01 May 1995

Spreading of multiple epidemics with cross immunization

scientific article published on 13 September 2012

Spreading out of perturbations in reversible reaction networks

scientific article

Stability puzzles in phage lambda

scientific article published on 16 May 2002

Stabilization of epigenetic states of CpG islands by local cooperation.

scientific article published on 29 February 2016

Structure and function of negative feedback loops at the interface of genetic and metabolic networks

scientific article

Superspreaders provide essential clues for mitigation of COVID-19

scientific article published on 18 September 2020

Superspreading quantified from bursty epidemic trajectories

scientific article published in December 2021

Surface roughening and the long-wavelength properties of the Kuramoto-Sivashinsky equation.

scientific article published in September 1992

Sustainability of spatially distributed bacteria-phage systems

scientific article published on 13 December 2018

Sustainability of virulence in a phage-bacterial ecosystem

scientific article

Sustained oscillations and time delays in gene expression of protein Hes1

article

Synchronization model for stock market asymmetry

scientific article published on 27 November 2006

Targeted bacterial immunity buffers phage diversity

scientific article

The cost and capacity of signaling in the Escherichia coli protein reaction network

scientific article published on 24 January 2008

The functional half-life of an mRNA depends on the ribosome spacing in an early coding region.

scientific article published on 19 January 2011

The generation of promoter-mediated transcriptional noise in bacteria

scientific article

The timing of natural killer cell response in coronavirus infection: a concise model perspective

scientific article published on 3 August 2021

Theoretical Tool Bridging Cell Polarities with Development of Robust Morphologies

scientific article published on 22 May 2018

Theoretical analysis of Polycomb-Trithorax systems predicts that poised chromatin is bistable and not bivalent

scientific article published on 13 May 2019

Theoretical analysis of epigenetic cell memory by nucleosome modification.

scientific article

Theoretical tool bridging cell polarities with development of robust morphologies

article

Theory for the stability and regulation of epigenetic landscapes.

scientific article published on 4 June 2010

Thermodynamical implications of a protein model with water interactions

scientific article published in June 2001

Thermodynamics of Heat-Shock Response

scientific article published in Physical Review Letters

Three is much more than two in coarsening dynamics of cyclic competitions ⬇️

Time delay as a key to apoptosis induction in the p53 network

article by Guido Tiana et al published September 2002 in European Physical Journal B

Time walkers and spatial dynamics of aging information

scientific article published on 29 January 2010

Toolbox model of evolution of prokaryotic metabolic networks and their regulation.

scholarly article

UV-induced mutagenesis in Escherichia coli SOS response: a quantitative model

scientific article

Ultrasensitive gene regulation by positive feedback loops in nucleosome modification

scientific article

Variability of Individual Infectiousness Derived from Aggregate Statistics of COVID-19

preprint

Variability-based sequence alignment identifies residues responsible for functional differences in alpha and beta tubulin

scientific article published on January 2004

Visualization of large-scale correlations in gene expressions

scientific article published on 26 August 2004

Well-temperate phage: optimal bet-hedging against local environmental collapses.

scientific article published on 2 June 2015

Why Do Phage Play Dice?

scientific article

Why do phage play dice?

scientific article published on 09 September 2009

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