List of works - Sergei Maslov

A toolbox model of evolution of metabolic pathways on networks of arbitrary topology

scientific article

Automatic pathway building in biological association networks

scientific article

Avalanche dynamics in evolution, growth, and depinning models

scientific article

Avalanches and 1/f noise in evolution and growth models

scientific article

Binding properties and evolution of homodimers in protein-protein interaction networks

scientific article

Computational architecture of the yeast regulatory network

scientific article published on 09 November 2005

Correlations, mean-field properties, and scaling of a one-dimensional sandpile model

scientific article published on 01 August 1993

DREISS: Using State-Space Models to Infer the Dynamics of Gene Expression Driven by External and Internal Regulatory Networks

scientific article

Detection of the dominant direction of information flow and feedback links in densely interconnected regulatory networks

scientific article

Diversity Waves in Collapse-Driven Population Dynamics ⬇️

scientific article published on 14 September 2015

Diversity, Stability, and Reproducibility in Stochastically Assembled Microbial Ecosystems

scientific article published on 01 April 2018

Energy Separation of Single-Particle and Continuum States in anS=1/2Weakly Coupled Chains Antiferromagnet

scientific article published on 01 November 2000

Evidence for a multi-level trophic organization of the human gut microbiome

scientific article published on 19 December 2019

Evolutionary capacitance and control of protein stability in protein-protein interaction networks

scientific article

Exact solution of a stochastic directed sandpile model

scientific article published on 24 January 2001

Exactly Solved Model of Self-Organized Criticality

scientific article published on 01 August 1995

Extracting hidden information from knowledge networks

scientific article published on 27 November 2001

Family-specific scaling laws in bacterial genomes

scientific article published on 9 June 2017

Fine-scale diversity of microbial communities due to satellite niches in boom and bust environments

scientific article published in 2022

Fluctuations in mass-action equilibrium of protein binding networks

scientific article published on 01 December 2008

Hierarchy measures in complex networks

scientific article published on 29 April 2004

Hitchhiking, collapse, and contingency in phage infections of migrating bacterial populations

scientific article published on 01 May 2020

Infinite Series of Exact Equations in the Bak-Sneppen Model of Biological Evolution.

scientific article published in August 1996

Joint scaling laws in functional and evolutionary categories in prokaryotic genomes.

scientific article published on 21 September 2011

KBase: The United States Department of Energy Systems Biology Knowledgebase

article

Large-Scale Public Transcriptomic Data Mining Reveals a Tight Connection between the Transport of Nitrogen and Other Transport Processes in Arabidopsis

scientific article

Large-scale atlas of microarray data reveals the distinct expression landscape of different tissues in Arabidopsis.

scientific article

Laws for stationary states in systems with extremal dynamics

scientific article published on 01 May 1995

Mitigation of SARS-CoV-2 transmission at a large public university

scientific article published in 2022

Modeling microbial cross-feeding at intermediate scale portrays community dynamics and species coexistence

scientific article published on 18 August 2020

Modularity and extreme edges of the internet

scientific article published on 11 April 2003

Multiple stable states in microbial communities explained by the stable marriage problem

scientific article published on 19 July 2018

Multistability and regime shifts in microbial communities explained by competition for essential nutrients

scientific article published on 22 November 2019

Onset of natural selection in populations of autocatalytic heteropolymers

article

Pan- and core- network analysis of co-expression genes in a model plant.

scientific article published on 16 December 2016

Population cycles and species diversity in dynamic Kill-the-Winner model of microbial ecosystems

scientific article

Predicting metabolomic profiles from microbial composition through neural ordinary differential equations

scientific article published in 2023

Promise and pitfalls of extending Google's PageRank algorithm to citation networks

scientific article published on October 2008

Propagation of large concentration changes in reversible protein-binding networks

scholarly article

Protein interaction networks beyond artifacts

scientific article published on 01 October 2002

Recombinant transfer in the basic genome of Escherichia coli.

scientific article published on 7 July 2015

Recombination-Driven Genome Evolution and Stability of Bacterial Species.

scientific article

Regime Shifts in a Phage-Bacterium Ecosystem and Strategies for Its Control

scientific article published on 05 November 2019

Scaling theory of depinning in the Sneppen model

scientific article published on 01 August 1994

Severe population collapses and species extinctions in multihost epidemic dynamics.

scientific article published on 22 August 2017

Specificity and stability in topology of protein networks

scientific article

Spontaneous emergence of autocatalytic information-coding polymers.

scientific article published in July 2015

Spreading out of perturbations in reversible reaction networks

scientific article

The network structure and eco-evolutionary dynamics of CRISPR-induced immune diversification

scientific article published on 19 October 2020

Time Directed Avalanches in Invasion Models

scientific article published on 01 January 1995

Toolbox model of evolution of prokaryotic metabolic networks and their regulation.

scholarly article

Transcriptional responses to sucrose mimic the plant-associated life style of the plant growth promoting endophyte Enterobacter sp. 638

scientific article

UV-induced mutagenesis in Escherichia coli SOS response: a quantitative model

scientific article

Understanding the differences between genome sequences of Escherichia coli B strains REL606 and BL21(DE3) and comparison of the E. coli B and K-12 genomes

scientific article published on 15 September 2009

Universal distribution of component frequencies in biological and technological systems.

scientific article published on 25 March 2013

Well-temperate phage: optimal bet-hedging against local environmental collapses.

scientific article published on 2 June 2015

Window of Opportunity for Mitigation to Prevent Overflow of ICU capacity in Chicago by COVID-19

scientific article (preprint)

List of works by Sergei Maslov

A toolbox model of evolution of metabolic pathways on networks of arbitrary topology

Automatic pathway building in biological association networks

Avalanche dynamics in evolution, growth, and depinning models

Avalanches and 1/f noise in evolution and growth models

Binding properties and evolution of homodimers in protein-protein interaction networks

Computational architecture of the yeast regulatory network

Correlations, mean-field properties, and scaling of a one-dimensional sandpile model

DREISS: Using State-Space Models to Infer the Dynamics of Gene Expression Driven by External and Internal Regulatory Networks

Detection of the dominant direction of information flow and feedback links in densely interconnected regulatory networks

Diversity Waves in Collapse-Driven Population Dynamics ⬇️

Diversity, Stability, and Reproducibility in Stochastically Assembled Microbial Ecosystems

Energy Separation of Single-Particle and Continuum States in anS=1/2Weakly Coupled Chains Antiferromagnet

Evidence for a multi-level trophic organization of the human gut microbiome

Evolutionary capacitance and control of protein stability in protein-protein interaction networks

Exact solution of a stochastic directed sandpile model

Exactly Solved Model of Self-Organized Criticality

Extracting hidden information from knowledge networks

Family-specific scaling laws in bacterial genomes

Fine-scale diversity of microbial communities due to satellite niches in boom and bust environments

Fluctuations in mass-action equilibrium of protein binding networks

Hierarchy measures in complex networks

Hitchhiking, collapse, and contingency in phage infections of migrating bacterial populations

Infinite Series of Exact Equations in the Bak-Sneppen Model of Biological Evolution.

Joint scaling laws in functional and evolutionary categories in prokaryotic genomes.

KBase: The United States Department of Energy Systems Biology Knowledgebase

Large-Scale Public Transcriptomic Data Mining Reveals a Tight Connection between the Transport of Nitrogen and Other Transport Processes in Arabidopsis

Large-scale atlas of microarray data reveals the distinct expression landscape of different tissues in Arabidopsis.

Laws for stationary states in systems with extremal dynamics

Mitigation of SARS-CoV-2 transmission at a large public university

Modeling microbial cross-feeding at intermediate scale portrays community dynamics and species coexistence

Modularity and extreme edges of the internet

Multiple stable states in microbial communities explained by the stable marriage problem

Multistability and regime shifts in microbial communities explained by competition for essential nutrients

Onset of natural selection in populations of autocatalytic heteropolymers

Pan- and core- network analysis of co-expression genes in a model plant.

Population cycles and species diversity in dynamic Kill-the-Winner model of microbial ecosystems

Predicting metabolomic profiles from microbial composition through neural ordinary differential equations

Promise and pitfalls of extending Google's PageRank algorithm to citation networks

Propagation of large concentration changes in reversible protein-binding networks

Protein interaction networks beyond artifacts

Recombinant transfer in the basic genome of Escherichia coli.

Recombination-Driven Genome Evolution and Stability of Bacterial Species.

Regime Shifts in a Phage-Bacterium Ecosystem and Strategies for Its Control

Scaling theory of depinning in the Sneppen model

Severe population collapses and species extinctions in multihost epidemic dynamics.

Specificity and stability in topology of protein networks

Spontaneous emergence of autocatalytic information-coding polymers.

Spreading out of perturbations in reversible reaction networks

The network structure and eco-evolutionary dynamics of CRISPR-induced immune diversification

Time Directed Avalanches in Invasion Models

Toolbox model of evolution of prokaryotic metabolic networks and their regulation.

Transcriptional responses to sucrose mimic the plant-associated life style of the plant growth promoting endophyte Enterobacter sp. 638

UV-induced mutagenesis in Escherichia coli SOS response: a quantitative model

Understanding the differences between genome sequences of Escherichia coli B strains REL606 and BL21(DE3) and comparison of the E. coli B and K-12 genomes

Universal distribution of component frequencies in biological and technological systems.

Well-temperate phage: optimal bet-hedging against local environmental collapses.

Window of Opportunity for Mitigation to Prevent Overflow of ICU capacity in Chicago by COVID-19