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Authors whose works are in public domain in at least one jurisdiction

List of works by Ilya Nemenman

A large number of receptors may reduce cellular response time variation

scientific article

ARACNE: An Algorithm for the Reconstruction of Gene Regulatory Networks in a Mammalian Cellular Context

scientific article

Adiabatic coarse-graining and simulations of stochastic biochemical networks

scientific article

Automated, predictive, and interpretable inference of C. elegans escape dynamics

article

Automated, predictive, and interpretable inference of escape dynamics

article

Chance, long tails, and inference in a non-Gaussian, Bayesian theory of vocal learning in songbirds

article published in the Proceedings of the National Academy of Sciences of the United States of America

Complexity through nonextensivity

article

Constrained brain volume in an efficient coding model explains the fraction of excitatory and inhibitory neurons in sensory cortices

scientific article published on 21 January 2022

Editorial: Selected papers from the Third q-bio Conference on Cellular Information Processing

scientific article published on 01 November 2010

Ergodic and non-ergodic anomalous diffusion in coupled stochastic processes

Erratum: “Specificity and completion time distributions of biochemical processes” [J. Chem. Phys. 131, 235103 (2009)]

scholarly article published in Journal of Chemical Physics

Fitness in time-dependent environments includes a geometric phase contribution

scientific article published on 23 November 2011

Fluctuation-dissipation theorem and models of learning.

scientific article published in September 2005

Gain control in molecular information processing: lessons from neuroscience ⬇️

scientific article published on April 4, 2012

Genome-Wide Discovery of Modulators of Transcriptional Interactions in Human B Lymphocytes

Genome-wide identification of post-translational modulators of transcription factor activity in human B cells.

scientific article published on 09 September 2009

Genotype to Phenotype Mapping and the Fitness Landscape of the E. coli lac Promoter ⬇️

scientific article published on January 1, 2013

Growth of bacteria in 3-d colonies

scientific article

Information transduction capacity of noisy biochemical signaling networks

scientific article (publication date: 21 October 2011)

Latent Dynamical Variables Produce Signatures of Spatiotemporal Criticality in Large Biological Systems

scientific article published on 17 March 2021

Mass conservation and inference of metabolic networks from high-throughput mass spectrometry data

scientific article

Mesoscopic statistical properties of multistep enzyme-mediated reactions ⬇️

scientific article published on September 1, 2009

Millisecond Spike Timing Codes for Motor Control

Minimal subtraction and the Callan-Symanzik equation

Model cortical association fields account for the time course and dependence on target complexity of human contour perception

scientific article

Neural Coding of Natural Stimuli: Information at Sub-Millisecond Resolution

article

Neural coding of natural stimuli: information at sub-millisecond resolution

scientific article

Neural coding of natural stimuli: information at sub-millisecond resolution

article

Novel computing paradigms: Quo vadis?

Occam factors and model independent Bayesian learning of continuous distributions

scientific article published on 24 January 2002

On the interaction of point charges in an arbitrary domain

article published in 2003

Potential and field singularity at a surface point charge

Predictability, Complexity, and Learning ⬇️

scientific article published on November 1, 2001

Q-bio 2007: a watershed moment in modern biology

scientific article published on 4 December 2007

Quantifying evolvability in small biological networks ⬇️

scientific article published on September 1, 2009

Randomly connected networks generate emergent selectivity and predict decoding properties of large populations of neurons ⬇️

scientific article published on 07 May 2020

Reconstruction of metabolic networks from high-throughput metabolite profiling data: in silico analysis of red blood cell metabolism

scientific article

Reverse engineering cellular networks.

scientific article published on January 2006

Reverse-Engineering Biological Networks From Large Data Sets

Selected papers from the Fourth Annual q-bio Conference on Cellular Information Processing

scientific article published on 10 August 2011

Specificity and completion time distributions of biochemical processes

scientific article

Speeding up Evolutionary Search by Small Fitness Fluctuations

scientific article published on July 2011

The Berry phase and the pump flux in stochastic chemical kinetics

article by N. A Sinitsyn & Ilya Nemenman published 15 February 2007 in Europhysics Letters

Time-dependent corrections to effective rate and event statistics in Michaelis–Menten kinetics ⬇️

scientific article published on November 1, 2010

Top-down models explain key aspects of a Speed-of-Sight character recognition task

article by G. Kenyon et al published 12 August 2010 in Journal of Vision

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