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List of works by Carlo Camilloni

A Conformational Ensemble Derived Using NMR Methyl Chemical Shifts Reveals a Mechanical Clamping Transition That Gates the Binding of the HU Protein to DNA

scientific article published in 2014

A Relationship between the Aggregation Rates of α-Synuclein Variants and the β-Sheet Populations in Their Monomeric Forms ⬇️

scientific article published on September 9, 2013

A highly compliant protein native state with a spontaneous-like mechanical unfolding pathway

scientific article published in 2012

A structural ensemble of a ribosome-nascent chain complex during cotranslational protein folding

scientific article

A structurally heterogeneous transition state underlies coupled binding and folding of disordered proteins

scientific article published in Journal of Biological Chemistry

A superposition free method for protein conformational ensemble analyses and local clustering based on a differential geometry representation of backbone

scientific article published in April 2019

A tensor-free method for the structural and dynamical refinement of proteins using residual dipolar couplings

scientific article

ALMOST: an all atom molecular simulation toolkit for protein structure determination.

scientific article

An implementation of the maximum-caliber principle by replica-averaged time-resolved restrained simulations

scientific article published on 01 May 2018

Archaeal MBF1 binds to 30S and 70S ribosomes via its helix-turn-helix domain

scientific article

Assessment of the use of NMR chemical shifts as replica-averaged structural restraints in molecular dynamics simulations to characterize the dynamics of proteins

scientific article published in February 2013

Atomistic simulations of the HIV-1 protease folding inhibition

scientific article published on 28 March 2008

Characterization of the conformational equilibrium between the two major substates of RNase A using NMR chemical shifts

scientific article

Characterization of the free-energy landscapes of proteins by NMR-guided metadynamics

scientific article published on 9 April 2013

Comparison of successive transition states for folding reveals alternative early folding pathways of two homologous proteins

scientific article

Conformational dynamics in crystals reveal the molecular bases for D76N beta-2 microglobulin aggregation propensity.

scientific article

Conformational recognition of an intrinsically disordered protein.

scientific article published on April 2014

Converging experimental and computational views of the knotting mechanism of a small knotted protein

scientific article published on 01 April 2021

Cryo-EM structure of cardiac amyloid fibrils from an immunoglobulin light chain AL amyloidosis patient

scientific article published on 20 March 2019

Cyclophilin A catalyzes proline isomerization by an electrostatic handle mechanism

scientific article

Determination of Protein Structural Ensembles by Hybrid-Resolution SAXS Restrained Molecular Dynamics

scientific article published on 11 March 2020

Determination of Secondary Structure Populations in Disordered States of Proteins Using Nuclear Magnetic Resonance Chemical Shifts

scientific article published on 06 March 2012

Determination of the conformational states of strychnine in solution using NMR residual dipolar couplings in a tensor-free approach

scientific article published on 21 July 2018

Determination of the individual roles of the linker residues in the interdomain motions of calmodulin using NMR chemical shifts

scientific article published on 12 February 2014

Dynamic binding mode of a Synaptotagmin-1-SNARE complex in solution

scientific article

Early events in protein folding: Is there something more than hydrophobic burst?

scientific article

Emergence and evolution of an interaction between intrinsically disordered proteins

scientific article

Energy landscape of the prion protein helix 1 probed by metadynamics and NMR.

scientific article published on 3 January 2012

Exploring the protein G helix free-energy surface by solute tempering metadynamics

scientific article published in June 2008

Folding Mechanism of the SH3 Domain from Grb2

scientific article published on 23 August 2018

From A to B: A ride in the free energy surfaces of protein G domains suggests how new folds arise ⬇️

scientific article published on May 14, 2012

Hierarchy of folding and unfolding events of protein G, CI2, and ACBP from explicit-solvent simulations

scientific article published in January 2011

Identification and Structural Characterization of an Intermediate in the Folding of the Measles Virus X Domain

scientific article

Identification of the folding inhibitors of hen-egg lysozyme: gathering the right tools

scientific article published on 27 March 2009

In-cell NMR characterization of the secondary structure populations of a disordered conformation of α-synuclein within E. coli cells

scientific article (publication date: 2013)

Inactivation of the Pyrimidine Biosynthesis pyrD Gene Negatively Affects Biofilm Formation and Virulence Determinants in the Crohn’s Disease-Associated Adherent Invasive Escherichia coli LF82 Strain

scientific article published in 2022

Integrative structural and dynamical biology with PLUMED-ISDB.

scientific article published on 21 August 2017

Lymphotactin: how a protein can adopt two folds

scientific article published on 01 December 2009

Mapping the Protein Fold Universe Using the CamTube Force Field in Molecular Dynamics Simulations

scientific article published on 27 October 2015

Mapping the transition state for a binding reaction between ancient intrinsically disordered proteins

scientific article published on 16 October 2020

Metadynamic metainference: Convergence towards force field independent structural ensembles of a disordered peptide.

scientific article published on April 2017

Metadynamic metainference: Enhanced sampling of the metainference ensemble using metadynamics

scientific article

Metadynamic sampling of the free-energy landscapes of proteins coupled with a Monte Carlo algorithm

scientific article published on 6 June 2008

Metainference: A Bayesian inference method for heterogeneous systems

scientific article published on 22 January 2016

MobiDB 3.0: more annotations for intrinsic disorder, conformational diversity and interactions in proteins.

scientific article published on 10 November 2017

Molecular Recognition by Templated Folding of an Intrinsically Disordered Protein

scientific article published on 25 February 2016

Molecular dynamics simulations with replica-averaged structural restraints generate structural ensembles according to the maximum entropy principle

scientific article published on 01 March 2013

NMR characterization of the conformational fluctuations of the human lymphocyte function-associated antigen-1 I-domain

scientific article published on 5 September 2014

Networks of Dynamic Allostery Regulate Enzyme Function

scientific article published on 27 December 2016

New opportunities for tensor-free calculations of residual dipolar couplings for the study of protein dynamics

scientific article published on 30 January 2014

Optical absorption of a green fluorescent protein variant: environment effects in a density functional study

scientific article published on 22 August 2007

PLUMED: A portable plugin for free-energy calculations with molecular dynamics

article

Principles of protein structural ensemble determination

scientific article

Properties of low-dimensional collective variables in the molecular dynamics of biopolymers ⬇️

scientific article published on 14 November 2016

Ratcheted molecular-dynamics simulations identify efficiently the transition state of protein folding ⬇️

scientific article published on December 21, 2012

Rational design of mutations that change the aggregation rate of a protein while maintaining its native structure and stability

scientific article published on 6 May 2016

Replica-Averaged Metadynamics

scientific article published on 21 November 2013

Reply to “Comment on ‘A Tensor-Free Method for the Structural and Dynamic Refinement of Proteins using Residual Dipolar Couplings’”

Sampling the Denatured State of Polypeptides in Water, Urea, and Guanidine Chloride to Strict Equilibrium Conditions with the Help of Massively Parallel Computers

scientific article

Sequence Specificity in the Entropy-Driven Binding of a Small Molecule and a Disordered Peptide

scientific article

Simultaneous NMR characterisation of multiple minima in the free energy landscape of an RNA UUCG tetraloop

scientific article published on 9 January 2017

Simultaneous quantification of protein order and disorder

scientific article published in March 2017

Small-molecule sequestration of amyloid-β as a drug discovery strategy for Alzheimer's disease

scientific article published on 04 November 2020

Stabilization and structural analysis of a membrane-associated hIAPP aggregation intermediate

scientific article

Statistical mechanics of the denatured state of a protein using replica-averaged metadynamics

scientific article published on 17 June 2014

Structural Basis of Inhibition of the Pioneer Transcription Factor NF-Y by Suramin

scientific article published on 29 October 2020

Structural Characterization of the Early Events in the Nucleation-Condensation Mechanism in a Protein Folding Process

scientific article published on 12 April 2017

Structural Insight into IAPP-Derived Amyloid Inhibitors and Their Mechanism of Action

scientific article published on 28 January 2020

Structural Insights into the Calcium-Mediated Allosteric Transition in the C-Terminal Domain of Calmodulin from Nuclear Magnetic Resonance Measurements.

scientific article published on 30 November 2015

Structural basis for terminal loop recognition and processing of pri-miRNA-18a by hnRNP A1

Structural characterization of the interaction of α-synuclein nascent chains with the ribosomal surface and trigger factor

scientific article published on 18 April 2016

Structure and Dynamics of GeoCyp: A Thermophilic Cyclophilin with a Novel Substrate Binding Mechanism That Functions Efficiently at Low Temperatures

scientific article published on 14 May 2015

Structure and dynamics of the integrin LFA-1 I-domain in the inactive state underlie its inside-out/outside-in signaling and allosteric mechanisms

scientific article published on 12 March 2015

Structure of a low-population binding intermediate in protein-RNA recognition

scientific article published on 10 June 2016

Systematic mapping of free energy landscapes of a growing filamin domain during biosynthesis

article published in the Proceedings of the National Academy of Sciences of the United States of America

The Antibody Light Chain Linker Regulates Domain Orientation and Amyloidogenicity

scientific article published on 08 November 2018

The H50Q mutation induces a 10-fold decrease in the solubility of α-synuclein.

scientific article

The PHR Family: The Role of Extracellular Transglycosylases in Shaping Candida albicans Cells.

scientific article

The dynamics of interleukin-8 and its interaction with human CXC receptor I peptide.

scientific article published on 12 February 2014

The dynamics of linear polyubiquitin

scientific article published on 14 October 2020

The inverted free energy landscape of an intrinsically disordered peptide by simulations and experiments

scientific article

The s2D method: simultaneous sequence-based prediction of the statistical populations of ordered and disordered regions in proteins

scientific article

Towards a structural biology of the hydrophobic effect in protein folding

scientific article

Understanding the frustration arising from the competition between function, misfolding, and aggregation in a globular protein

scientific article

Urea and guanidinium chloride denature protein L in different ways in molecular dynamics simulations

scientific article published on 13 March 2008

Using Pseudocontact Shifts and Residual Dipolar Couplings as Exact NMR Restraints for the Determination of Protein Structural Ensembles

scientific article published in December 2015

l- to d-Amino Acid Substitution in the Immunodominant LCMV-Derived Epitope gp33 Highlights the Sensitivity of the TCR Recognition Mechanism for the MHC/Peptide Structure and Dynamics

scientific article published on 07 March 2022

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