List of works by Pedro Beltrao

A Genome-wide Ras-Effector Interaction Network

A SARS-CoV-2 protein interaction map reveals targets for drug repurposing

scientific article published on 30 April 2020

A SARS-CoV-2-Human Protein-Protein Interaction Map Reveals Drug Targets and Potential Drug-Repurposing ⬇️

journal article from 'bioRxiv' published in 2020

A human B-cell interactome identifies MYB and FOXM1 as master regulators of proliferation in germinal centers

scientific article

A resource of variant effect predictions of single nucleotide variants in model organisms

A structural biology community assessment of AlphaFold 2 applications

A structural biology community assessment of AlphaFold2 applications

scientific article published in 2022

ADAN: a database for prediction of protein-protein interaction of modular domains mediated by linear motifs

scientific article

Actionable druggable genome-wide Mendelian randomization identifies repurposing opportunities for COVID-19

scientific article

An atlas of human kinase regulation

scientific article published on December 2016

Analyzing protein interaction networks using structural information

scientific article published on January 2008

Benchmarking substrate-based kinase activity inference using phosphoproteomic data

scientific article

Capturing variation impact on molecular interactions in the IMEx Consortium mutations data set

scientific article published in Nature Communications

Capturing variation impact on molecular interactions: the IMEx Consortium mutations data set

Causal integration of multi-omics data with prior knowledge to generate mechanistic hypotheses

scientific article published on 01 January 2021

Comparative genomics and disorder prediction identify biologically relevant SH3 protein interactions

scientific article

Comparative genomics and disorder prediction identify biologically relevant SH3 protein interactions

Comparative host-coronavirus protein interaction networks reveal pan-viral disease mechanisms

scientific article published on 15 October 2020

Comparative interaction networks: bridging genotype to phenotype.

scientific article published on January 2012

Conserved phosphorylation hotspots in eukaryotic protein domain families

scientific article published on 29 April 2019

Copy number aberrations drive kinase re-wiring leading to genetic vulnerabilities in cancer

Copy number aberrations drive kinase rewiring, leading to genetic vulnerabilities in cancer

scientific article published on 01 May 2021

Correction: Evolution of Phosphoregulation: Comparison of Phosphorylation Patterns across Yeast Species.

scientific article published on 25 November 2009

Correction: Specificity and Evolvability in Eukaryotic Protein Interaction Networks.

scientific article

Cross-species chemogenomic profiling reveals evolutionarily conserved drug mode of action

scientific article

Differential genetic interactions of yeast stress response MAPK pathways

scientific article published on 17 April 2015

Evolution and functional cross-talk of protein post-translational modifications

scientific article

Evolution of enhanced innate immune evasion by SARS-CoV-2

scientific article published on 23 December 2021

Evolution of enhanced innate immune evasion by the SARS-CoV-2 B.1.1.7 UK variant

scientific article

Evolution of phosphoregulation: comparison of phosphorylation patterns across yeast species

scientific article

Evolution of protein kinase substrate recognition at the active site

scientific article published on 24 June 2019

Evolution of protein phosphorylation across 18 fungal species.

scientific article published in October 2016

Evolution, dynamics and dysregulation of kinase signalling

scientific article published on 6 January 2018

Evolvability and hierarchy in rewired bacterial gene networks

scientific article published in April 2008

Genome-wide prediction of SH2 domain targets using structural information and the FoldX algorithm.

scientific article

Genomic Determinants of Protein Abundance Variation in Colorectal Cancer Cells.

scientific article published on August 2017

Genomic determinants of protein abundance variation in colorectal cancer cells

Global analysis of phosphorylation and ubiquitylation cross-talk in protein degradation

scientific article published on 09 June 2013

Hierarchical modularity and the evolution of genetic interactomes across species.

scientific article

High-throughput functional characterization of protein phosphorylation sites in yeast

scientific article published on 18 October 2021

Identifications of Putative PKA Substrates with Quantitative Phosphoproteomics and Primary-Sequence-Based Scoring.

scientific article published on 13 March 2017

Kinase-two-hybrid: towards the conditional interactome

scientific article published on 26 March 2015

Major role of iron uptake systems in the intrinsic extra-intestinal virulence of the genus Escherichia revealed by a genome-wide association study

scientific article published on 28 October 2020

Meiotic nuclear pore complex remodeling provides key insights into nuclear basket organization

scientific article published in 2022

Multi-omics Characterization of Interaction-mediated Control of Human Protein Abundance levels

scientific article published on 25 June 2019

Phenotype inference in an Escherichia coli strain panel.

scientific article published on 27 December 2017

Phenotype prediction in an Escherichia coli strain panel

scholarly article published 24 May 2017

Phenotypic landscape of a bacterial cell

scientific article

Phosphoproteomic analysis reveals regulatory mechanisms at the kidney filtration barrier

scientific article

Prediction of Functionally Important Phospho-Regulatory Events in Xenopus laevis Oocytes.

scientific article

Publisher Correction: Capturing variation impact on molecular interactions in the IMEx Consortium mutations data set

scientific article published on 04 March 2019

Publisher Correction: Evolution of enhanced innate immune evasion by SARS-CoV-2

correction of a scholarly article

Quantitative genetic interactions reveal biological modularity

scientific article published on May 2010

Reconstructing phosphorylation signalling networks from quantitative phosphoproteomic data

scholarly article by Brandon M Invergo published in October 2018

SARS-CoV-2 infection remodels the host protein thermal stability landscape

scientific article published on 01 February 2021

Selective deployment of transcription factor paralogs with submaximal strength facilitates gene regulation in the immune system

scientific article published on 26 August 2019

Sequence and Structure-Based Analysis of Specificity Determinants in Eukaryotic Protein Kinases

scientific article published on 01 January 2021

Site-specific acetylation mark on an essential chromatin-remodeling complex promotes resistance to replication stress

scientific article

SmartCell, a framework to simulate cellular processes that combines stochastic approximation with diffusion and localisation: analysis of simple networks.

scientific article published in June 2004

Spatiotemporal proteomics uncovers cathepsin-dependent macrophage cell death during Salmonella infection

scientific article published on 08 June 2020

Specificity and Evolvability in Eukaryotic Protein Interaction Networks

scientific article published on 28 December 2006

Specificity and evolvability in eukaryotic protein interaction networks

scientific article

Structure-based prediction of the Saccharomyces cerevisiae SH3-ligand interactions

scientific article

Structures in systems biology

scientific article published on 15 June 2007

Sub-minute Phosphoregulation of Cell Cycle Systems during Plasmodium Gamete Formation

scientific article published in November 2017

Sub-minute phosphoregulation of cell-cycle systems during Plasmodium gamete formation

Systematic Analysis of Transcriptional and Post-transcriptional Regulation of Metabolism in Yeast

scientific article

Systematic functional prioritization of protein posttranslational modifications

scientific article

The Global Phosphorylation Landscape of SARS-CoV-2 Infection

scientific article published on 28 June 2020

The effects of pathogenic and likely pathogenic variants for inherited hemostasis disorders in 140 214 UK Biobank participants

The functional landscape of the human phosphoproteome

The functional landscape of the human phosphoproteome

scientific article published on 09 December 2019

The impact of the genetic background on gene deletion phenotypes in Saccharomyces cerevisiae

scientific article published on 01 December 2019

Towards the computational design of protein post-translational regulation

scientific article

Uncovering Phosphorylation-Based Specificities through Functional Interaction Networks

scientific article

Unraveling tumor-immune heterogeneity in advanced ovarian cancer uncovers immunogenic effect of chemotherapy

scientific article published on 01 June 2020

Widespread Post-transcriptional Attenuation of Genomic Copy-Number Variation in Cancer

scientific article published on 9 October 2017

iProteinDB: An Integrative Database of Post-translational Modifications

scientific article published on 09 January 2019

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