List of works - Nurcan Tuncbag

3D spatial organization and network-guided comparison of mutation profiles in Glioblastoma reveals similarities across patients

scientific article published on 17 January 2019

3D spatial organization and network-guided comparison of mutation profiles in Glioblastoma reveals similarities across patients

scientific article published on 17 September 2019

A Structural Perspective on the Modulation of Protein-Protein Interactions with Small Molecules

scientific article published on 01 January 2018

A survey of available tools and web servers for analysis of protein-protein interactions and interfaces

scientific article published on 24 February 2009

Analysis and network representation of hotspots in protein interfaces using minimum cut trees.

scientific article published in August 2010

Architectures and functional coverage of protein-protein interfaces

scientific article published on 06 May 2008

Characterization and Prediction of Protein Interfaces to Infer Protein-Protein Interaction Networks

scientific article

Comparative phosphoproteomic analysis reveals signaling networks regulating monopolar and bipolar cytokinesis.

scientific article published on 2 February 2018

Fast and accurate modeling of protein-protein interactions by combining template-interface-based docking with flexible refinement

scientific article published on 31 January 2012

Functional Constraints on Replacing an Essential Gene with Its Ancient and Modern Homologs

scientific article published on 29 August 2017

Genome-Scale Networks Link Neurodegenerative Disease Genes to α-Synuclein through Specific Molecular Pathways

scientific article

HotPoint: hot spot prediction server for protein interfaces

scientific article published on 5 May 2010

HotSprint: database of computational hot spots in protein interfaces

scientific article published on 24 October 2007

Identification of computational hot spots in protein interfaces: combining solvent accessibility and inter-residue potentials improves the accuracy.

scientific article

Network Modeling Identifies Patient-specific Pathways in Glioblastoma.

scientific article published on 29 June 2016

Network-Based Interpretation of Diverse High-Throughput Datasets through the Omics Integrator Software Package

scientific article

Performance Assessment of the Network Reconstruction Approaches on Various Interactomes

scientific article published on 05 October 2021

Phylogenetic and Other Conservation-Based Approaches to Predict Protein Functional Sites

scientific article published in 2018

Predicting Protein-Protein Interactions from the Molecular to the Proteome Level

scientific article published on 13 April 2016

Predicting protein-protein interactions on a proteome scale by matching evolutionary and structural similarities at interfaces using PRISM.

scientific article published on 11 August 2011

Prediction of Protein Interactions by Structural Matching: Prediction of PPI Networks and the Effects of Mutations on PPIs that Combines Sequence and Structural Information

scientific article published on January 2017

Prediction of protein-protein interactions: unifying evolution and structure at protein interfaces

scientific article published on 13 May 2011

Reconstruction of the temporal signaling network in Salmonella-infected human cells

scientific article published on 20 July 2015

Simultaneous reconstruction of multiple signaling pathways via the prize-collecting steiner forest problem

scientific article published on February 2013

SteinerNet: a web server for integrating 'omic' data to discover hidden components of response pathways.

scientific article

The PI3K/AKT/mTOR interactive pathway.

scientific article published in July 2015

The overexpression of DNA repair genes in invasive ductal and lobular breast carcinomas: Insights on individual variations and precision medicine

scientific article published on 04 March 2021

The potential impact of recent developments in three-dimensional quantitative interaction proteomics on structural biology

scientific article published on 22 April 2016

Towards inferring time dimensionality in protein-protein interaction networks by integrating structures: the p53 example ⬇️

scientific article published in December 2009

List of works by Nurcan Tuncbag

3D spatial organization and network-guided comparison of mutation profiles in Glioblastoma reveals similarities across patients

3D spatial organization and network-guided comparison of mutation profiles in Glioblastoma reveals similarities across patients

A Structural Perspective on the Modulation of Protein-Protein Interactions with Small Molecules

A survey of available tools and web servers for analysis of protein-protein interactions and interfaces

Analysis and network representation of hotspots in protein interfaces using minimum cut trees.

Architectures and functional coverage of protein-protein interfaces

Characterization and Prediction of Protein Interfaces to Infer Protein-Protein Interaction Networks

Comparative phosphoproteomic analysis reveals signaling networks regulating monopolar and bipolar cytokinesis.

Fast and accurate modeling of protein-protein interactions by combining template-interface-based docking with flexible refinement

Functional Constraints on Replacing an Essential Gene with Its Ancient and Modern Homologs

Genome-Scale Networks Link Neurodegenerative Disease Genes to α-Synuclein through Specific Molecular Pathways

HotPoint: hot spot prediction server for protein interfaces

HotSprint: database of computational hot spots in protein interfaces

Identification of computational hot spots in protein interfaces: combining solvent accessibility and inter-residue potentials improves the accuracy.

Network Modeling Identifies Patient-specific Pathways in Glioblastoma.

Network-Based Interpretation of Diverse High-Throughput Datasets through the Omics Integrator Software Package

Performance Assessment of the Network Reconstruction Approaches on Various Interactomes

Phylogenetic and Other Conservation-Based Approaches to Predict Protein Functional Sites

Predicting Protein-Protein Interactions from the Molecular to the Proteome Level

Predicting protein-protein interactions on a proteome scale by matching evolutionary and structural similarities at interfaces using PRISM.

Prediction of Protein Interactions by Structural Matching: Prediction of PPI Networks and the Effects of Mutations on PPIs that Combines Sequence and Structural Information

Prediction of protein-protein interactions: unifying evolution and structure at protein interfaces

Reconstruction of the temporal signaling network in Salmonella-infected human cells

Simultaneous reconstruction of multiple signaling pathways via the prize-collecting steiner forest problem

SteinerNet: a web server for integrating 'omic' data to discover hidden components of response pathways.

The PI3K/AKT/mTOR interactive pathway.

The overexpression of DNA repair genes in invasive ductal and lobular breast carcinomas: Insights on individual variations and precision medicine

The potential impact of recent developments in three-dimensional quantitative interaction proteomics on structural biology

Towards inferring time dimensionality in protein-protein interaction networks by integrating structures: the p53 example ⬇️