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List of works by Anthony Gitter

A network-based approach for predicting missing pathway interactions

scientific article

An Open-Publishing Response to the COVID-19 Infodemic

Backup in gene regulatory networks explains differences between binding and knockout results.

scientific article published on 16 June 2009

CBioC: beyond a prototype for collaborative annotation of molecular interactions from the literature.

scientific article published in January 2007

Classifying T cell activity in autofluorescence intensity images with convolutional neural networks

scientific article published on 15 December 2019

Computational methods for analyzing dynamic regulatory networks

scientific article published on January 2010

Computationally efficient measure of topological redundancy of biological and social networks

scientific article published on 29 September 2011

Current and future directions in network biology

scientific article published in 2024

DREM 2.0: Improved reconstruction of dynamic regulatory networks from time-series expression data

scientific article

Discovering pathways by orienting edges in protein interaction networks

scientific article

Identifying proteins controlling key disease signaling pathways

scientific article published on July 2013

Inferring signaling pathways with probabilistic programming

scientific article published on 01 December 2020

Integrated systems biology analysis of KSHV latent infection reveals viral induction and reliance on peroxisome mediated lipid metabolism.

scientific article

Lag penalized weighted correlation for time series clustering

scientific article published on 16 January 2020

Learning Drug Functions from Chemical Structures with Convolutional Neural Networks and Random Forests

scientific article published on 03 October 2019

Linking the signaling cascades and dynamic regulatory networks controlling stress responses

scientific article published on 11 October 2012

Multitask learning of signaling and regulatory networks with application to studying human response to flu

scientific article published on 18 December 2014

Network inference reveals novel connections in pathways regulating growth and defense in the yeast salt response.

scientific article

Network inference with Granger causality ensembles on single-cell transcriptomics

scientific article published on 01 February 2022

Network-Based Interpretation of Diverse High-Throughput Datasets through the Omics Integrator Software Package

scientific article

Open collaborative writing with Manubot

scientific article published in June 2019

Opportunities And Obstacles For Deep Learning In Biology And Medicine

scholarly article published 28 May 2017

Opportunities and obstacles for deep learning in biology and medicine.

scientific article published in April 2018

Practical Model Selection for Prospective Virtual Screening

scientific article published on 18 December 2018

Predicting kinase inhibitors using bioactivity matrix derived informer sets

scientific article published on 05 August 2019

Sharing information to reconstruct patient-specific pathways in heterogeneous diseases

scientific article published on January 2014

Studying and modelling dynamic biological processes using time-series gene expression data

scientific article published on July 18, 2012

Synthesizing Signaling Pathways from Temporal Phosphoproteomic Data

scientific article published on 01 September 2018

Ten quick tips for deep learning in biology

scientific article published on 24 March 2022

The SDREM Method for Reconstructing Signaling and Regulatory Response Networks: Applications for Studying Disease Progression.

scientific article published on January 2016