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List of works by Laurence Calzone

A Modeling Approach to Explain Mutually Exclusive and Co-Occurring Genetic Alterations in Bladder Tumorigenesis

scientific article published on 3 August 2015

A comprehensive approach to the molecular determinants of lifespan using a Boolean model of geroconversion.

scientific article

A comprehensive modular map of molecular interactions in RB/E2F pathway

scientific article published on 4 March 2008

Aberrant ERBB4-SRC Signaling as a Hallmark of Group 4 Medulloblastoma Revealed by Integrative Phosphoproteomic Profiling

scientific article published on 01 September 2018

Addressing <i>barriers in comprehensiveness, accessibility, reusability, interoperability and reproducibility of computational models in systems biology</i>

Atlas of Cancer Signalling Network: a systems biology resource for integrative analysis of cancer data with Google Maps

scientific article

BIOCHAM: an environment for modeling biological systems and formalizing experimental knowledge

scientific article published on 3 May 2006

BiNoM 2.0, a Cytoscape plugin for accessing and analyzing pathways using standard systems biology formats

scientific article

BiNoM: a Cytoscape plugin for manipulating and analyzing biological networks

scientific article published on 16 November 2007

Biologie des systèmes appliqués aux cancers

scientific article published on 01 June 2009

CSIG-15. PROTEOMIC AND PHOSPHOPROTEOMIC ANALYSIS OF HUMAN MEDULLOBLASTOMA REVEALS DISTINCT ACTIVATED PATHWAYS BETWEEN SUBGROUPS

Cell death and life in cancer: mathematical modeling of cell fate decisions

scientific article published in January 2012

Conceptual and computational framework for logical modelling of biological networks deregulated in diseases

scientific article published on 8 December 2017

Continuous time Boolean modeling for biological signaling: application of Gillespie algorithm

scientific article

DeDaL: Cytoscape 3 app for producing and morphing data-driven and structure-driven network layouts

scientific article

Dynamical modeling of syncytial mitotic cycles in Drosophila embryos

scientific article

Erratum: The Systems Biology Graphical Notation

scholarly article published in Nature Biotechnology

How Cell Decides Between Life and Death: Mathematical Modeling of Epigenetic Landscapes of Cellular Fates

Integrative modelling of the influence of MAPK network on cancer cell fate decision

scientific article (publication date: October 2013)

Integrative multi-omics module network inference with Lemon-Tree

scientific article published on 13 February 2015

Logic Modeling in Quantitative Systems Pharmacology

scientific article

MaBoSS 2.0: an environment for stochastic Boolean modeling

scientific article published in July 2017

Mathematical Modelling of Molecular Pathways Enabling Tumour Cell Invasion and Migration

scientific article published on 3 November 2015

Mathematical modelling of cell-fate decision in response to death receptor engagement

scientific article

Modeling regulatory networks at Virginia Tech

scientific article

Modelling of Immune Checkpoint Network Explains Synergistic Effects of Combined Immune Checkpoint Inhibitor Therapy and the Impact of Cytokines in Patient Response

scientific article published on 02 December 2020

Multiscale model of the different modes of cancer cell invasion

scientific article published in 2023

NaviCell Web Service for network-based data visualization

scientific article

NaviCell: a web-based environment for navigation, curation and maintenance of large molecular interaction maps

scientific article

On circuit functionality in Boolean networks

scientific article published on 16 March 2013

Patient-specific Boolean models of signalling networks guide personalised treatments

scientific article published in 2022

PhysiBoSS: a multi-scale agent based modelling framework integrating physical dimension and cell signalling

Predicting genetic interactions from Boolean models of biological networks

scientific article published on 11 May 2015

Prediction of Mutations to Control Pathways Enabling Tumour Cell Invasion with the CoLoMoTo Interactive Notebook (Tutorial)

Qualitative dynamics semantics for SBGN process description

scientific article

ROMA: Representation and Quantification of Module Activity from Target Expression Data

scientific article

Rapid proteotyping reveals cancer biology and drug response determinants in the NCI-60 cells

Setting the basis of best practices and standards for curation and annotation of logical models in biology-highlights of the [BC]2 2019 CoLoMoTo/SysMod Workshop

scientific article published on 21 April 2020

Understanding Different Types of Cell Death Using Systems Biology

article