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List of works by Mark J. Dunning

5-hydroxymethylcytosine marks promoters in colon that resist DNA hypermethylation in cancer

scientific article published on April 2015

A re-annotation pipeline for Illumina BeadArrays: improving the interpretation of gene expression data

scientific article

A tumor DNA complex aberration index is an independent predictor of survival in breast and ovarian cancer

scientific article

Analysis of circulating tumor DNA to monitor metastatic breast cancer

scientific article (publication date: 28 March 2013)

BASH: a tool for managing BeadArray spatial artefacts

scientific article published on 25 October 2008

BeadArray expression analysis using bioconductor.

scientific article published on December 2011

Calling sample mix-ups in cancer population studies

scientific article

Consensus Genomic Subtypes of Muscle-invasive Bladder Cancer: A Step in the Right Direction but Still a Long Way To Go

scientific article published on 24 October 2019

Considerations for the processing and analysis of GoldenGate-based two-colour Illumina platforms.

scientific article published on 19 January 2009

Corrigendum to "Integration of Copy Number and Transcriptomics Provides Risk Stratification in Prostate Cancer: A Discovery and Validation Cohort Study" [EBioMedicine 2 (9) (2015) 1133-1144].

scientific article published on 8 March 2017

Differential oestrogen receptor binding is associated with clinical outcome in breast cancer

scientific article

Effects of BRCA2 cis-regulation in normal breast and cancer risk amongst BRCA2 mutation carriers

scientific article

Gene regulatory mechanisms underpinning prostate cancer susceptibility

scientific article published on 07 March 2016

Genome-driven integrated classification of breast cancer validated in over 7,500 samples

scientific article

HES5 silencing is an early and recurrent change in prostate tumourigenesis

scientific article

Identification of potential therapeutic targets in prostate cancer through a cross-species approach.

scientific article published on 5 February 2018

Integration of copy number and transcriptomics provides risk stratification in prostate cancer: A discovery and validation cohort study

scientific article

Loss of centrioles causes chromosomal instability in vertebrate somatic cells

scientific article

MicroRNA expression profiling of human breast cancer identifies new markers of tumor subtype

scientific article

Mining Human Prostate Cancer Datasets: The "camcAPP" Shiny App.

scientific article

Ordering of mutations in preinvasive disease stages of esophageal carcinogenesis.

scientific article

PMC42, a breast progenitor cancer cell line, has normal-like mRNA and microRNA transcriptomes

scientific article published on 27 June 2008

Quantitative image analysis of cellular heterogeneity in breast tumors complements genomic profiling

scientific article

Relative impact of nucleotide and copy number variation on gene expression phenotypes

scientific article (publication date: 9 February 2007)

Spike-in validation of an Illumina-specific variance-stabilizing transformation

scientific article

Statistical issues in the analysis of Illumina data

scientific article

The Early Effects of Rapid Androgen Deprivation on Human Prostate Cancer

scientific article

The importance of platform annotation in interpreting microarray data

article by Mark J. Dunning et al published August 2010 in Lancet Oncology Commission

The pitfalls of platform comparison: DNA copy number array technologies assessed

scientific article

Translating a Prognostic DNA Genomic Classifier into the Clinic: Retrospective Validation in 563 Localized Prostate Tumors

scientific article

Tumour genomic and microenvironmental heterogeneity for integrated prediction of 5-year biochemical recurrence of prostate cancer: a retrospective cohort study

scientific article

ZNF703 is a common Luminal B breast cancer oncogene that differentially regulates luminal and basal progenitors in human mammary epithelium

scientific article

beadarray: R classes and methods for Illumina bead-based data.

scientific article

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