List of works by Carlos F. López

Activated Oncogenic Pathway Modifies Iron Network in Breast Epithelial Cells: A Dynamic Modeling Perspective.

scientific article

An unbiased metric of antiproliferative drug effect in vitro

scientific article

Arrestin-3 scaffolding of the JNK3 cascade suggests a mechanism for signal amplification

scientific article published on 27 December 2018

CASP11--An Evaluation of a Modular BCL::Fold-Based Protein Structure Prediction Pipeline.

scientific article

Competition and allostery govern substrate selectivity of cyclooxygenase-2.

scientific article

GPU-powered model analysis with PySB/cupSODA.

scientific article published on 28 June 2017

Integrated, High-Throughput, Multiomics Platform Enables Data-Driven Construction of Cellular Responses and Reveals Global Drug Mechanisms of Action.

scientific article

Interactive Multiresolution Visualization of Cellular Network Processes

scientific article published on 29 November 2019

Microbench: automated metadata management for systems biology benchmarking and reproducibility in Python

scientific article published in 2022

Modeling surfactant adsorption on hydrophobic surfaces

scientific article published on 08 June 2005

Probing Membrane Insertion Activity of Antimicrobial Polymers via Coarse-grain Molecular Dynamics

scientific article

Processes in DNA damage response from a whole-cell multi-omics perspective

scientific article published in 2022

Programmatic modeling for biological systems

scientific article published in 2021

PyDREAM: High-dimensional parameter inference for biological models in Python

scientific article published on 4 October 2017

Rule-based modeling: a computational approach for studying biomolecular site dynamics in cell signaling systems.

scientific article published on 30 September 2013

Transmembrane peptide-induced lipid sorting and mechanism of Lalpha-to-inverted phase transition using coarse-grain molecular dynamics.

scientific article

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