List of works - Dmitry A. Ravcheev

A Gibbs sampler for identification of symmetrically structured, spaced DNA motifs with improved estimation of the signal length.

scientific article

Comparative Genomic Analysis of the Human Gut Microbiome Reveals a Broad Distribution of Metabolic Pathways for the Degradation of Host-Synthetized Mucin Glycans and Utilization of Mucin-Derived Monosaccharides

scientific article published on 29 August 2017

Comparative genomic analysis of regulation of anaerobic respiration in ten genomes from three families of gamma-proteobacteria (Enterobacteriaceae, Pasteurellaceae, Vibrionaceae).

scientific article

Comparative genomic analysis of the hexuronate metabolism genes and their regulation in gammaproteobacteria.

scientific article published on 27 May 2011

Comparative genomic reconstruction of transcriptional networks controlling central metabolism in the Shewanella genus

scientific article

Comparative genomics and evolution of regulons of the LacI-family transcription factors

scientific article

Comparative genomics of ethanolamine utilization

scientific article published on 25 September 2009

Generation of genome-scale metabolic reconstructions for 773 members of the human gut microbiota.

scientific article

Genomic Analysis of the Human Gut Microbiome Suggests Novel Enzymes Involved in Quinone Biosynthesis

scientific article published on 9 February 2016

Genomic reconstruction of transcriptional regulatory networks in lactic acid bacteria.

scientific article

Nitrogen Fixation and Molecular Oxygen: Comparative Genomic Reconstruction of Transcription Regulation in Alphaproteobacteria.

scientific article published on 26 August 2016

Paracoccus denitrificans possesses two BioR homologs having a role in regulation of biotin metabolism

scientific article

Polysaccharides utilization in human gut bacterium Bacteroides thetaiotaomicron: comparative genomics reconstruction of metabolic and regulatory networks

scientific article

Redox-responsive repressor Rex modulates alcohol production and oxidative stress tolerance in Clostridium acetobutylicum.

scientific article

RegPrecise 3.0 – A resource for genome-scale exploration of transcriptional regulation in bacteria

scientific article

Regulation and evolution of malonate and propionate catabolism in proteobacteria.

scientific article

Systematic genome assessment of B-vitamin biosynthesis suggests co-operation among gut microbes

scientific article

Systematic genomic analysis reveals the complementary aerobic and anaerobic respiration capacities of the human gut microbiota

scientific article

Temporal regulation of gene expression of the Escherichia coli bacteriophage phiEco32.

scientific article published on 10 January 2012

Transcriptional regulation of central carbon and energy metabolism in bacteria by redox-responsive repressor Rex

scientific article published on 30 December 2011

Transcriptional regulation of the carbohydrate utilization network in Thermotoga maritima

scientific article published on 23 August 2013

Two novel regulators of N-acetyl-galactosamine utilization pathway and distinct roles in bacterial infections

scientific article

Visualization of individual DNA loops and a map of loop domains in the human dystrophin gene.

scientific article

List of works by Dmitry A. Ravcheev

A Gibbs sampler for identification of symmetrically structured, spaced DNA motifs with improved estimation of the signal length.

Comparative Genomic Analysis of the Human Gut Microbiome Reveals a Broad Distribution of Metabolic Pathways for the Degradation of Host-Synthetized Mucin Glycans and Utilization of Mucin-Derived Monosaccharides

Comparative genomic analysis of regulation of anaerobic respiration in ten genomes from three families of gamma-proteobacteria (Enterobacteriaceae, Pasteurellaceae, Vibrionaceae).

Comparative genomic analysis of the hexuronate metabolism genes and their regulation in gammaproteobacteria.

Comparative genomic reconstruction of transcriptional networks controlling central metabolism in the Shewanella genus

Comparative genomics and evolution of regulons of the LacI-family transcription factors

Comparative genomics of ethanolamine utilization

Generation of genome-scale metabolic reconstructions for 773 members of the human gut microbiota.

Genomic Analysis of the Human Gut Microbiome Suggests Novel Enzymes Involved in Quinone Biosynthesis

Genomic reconstruction of transcriptional regulatory networks in lactic acid bacteria.

Nitrogen Fixation and Molecular Oxygen: Comparative Genomic Reconstruction of Transcription Regulation in Alphaproteobacteria.

Paracoccus denitrificans possesses two BioR homologs having a role in regulation of biotin metabolism

Polysaccharides utilization in human gut bacterium Bacteroides thetaiotaomicron: comparative genomics reconstruction of metabolic and regulatory networks

Redox-responsive repressor Rex modulates alcohol production and oxidative stress tolerance in Clostridium acetobutylicum.

RegPrecise 3.0 – A resource for genome-scale exploration of transcriptional regulation in bacteria

Regulation and evolution of malonate and propionate catabolism in proteobacteria.

Systematic genome assessment of B-vitamin biosynthesis suggests co-operation among gut microbes

Systematic genomic analysis reveals the complementary aerobic and anaerobic respiration capacities of the human gut microbiota

Temporal regulation of gene expression of the Escherichia coli bacteriophage phiEco32.

Transcriptional regulation of central carbon and energy metabolism in bacteria by redox-responsive repressor Rex

Transcriptional regulation of the carbohydrate utilization network in Thermotoga maritima

Two novel regulators of N-acetyl-galactosamine utilization pathway and distinct roles in bacterial infections

Visualization of individual DNA loops and a map of loop domains in the human dystrophin gene.