List of works - Jason R. Miller

A catalog of reference genomes from the human microbiome

scientific article

A comparison of whole-genome shotgun-derived mouse chromosome 16 and the human genome

scientific article

A draft genome sequence for the Ixodes scapularis cell line, ISE6.

scientific article

A host subtraction database for virus discovery in human cell line sequencing data

scientific article published on 23 January 2018

Aggressive assembly of pyrosequencing reads with mates

scientific article published on 24 October 2008

An algorithm for automated closure during assembly

scientific article

An improved genome assembly uncovers prolific tandem repeats in Atlantic cod

scientific article

Analysis of the Aedes albopictus C6/36 genome provides insight into cell line utility for viral propagation

scientific article published on 10 January 2018

Araport: the Arabidopsis information portal

scientific article

Assembly algorithms for next-generation sequencing data

scientific article

Canu: scalable and accurate long-read assembly via adaptive k-mer weighting and repeat separation

scientific article

Consensus generation and variant detection by Celera Assembler

scientific article

Creating Python Algorithms to Mimic R Functions from the R Stats Package

scientific article published on 20 May 2022

Exploring structural variation and gene family architecture with De Novo assemblies of 15 Medicago genomes

scientific article

Gene and alternative splicing annotation with AIR.

scientific article

Genetic diversity and population structure of the endangered marsupial Sarcophilus harrisii (Tasmanian devil)

scientific article

Genome sequence of Aedes aegypti, a major arbovirus vector

scientific article

Genomic innovations, transcriptional plasticity and gene loss underlying the evolution and divergence of two highly polyphagous and invasive Helicoverpa pest species. ⬇️

scientific article published on 31 July 2017

Genomic insights into the Ixodes scapularis tick vector of Lyme disease

scientific article published on 9 February 2016

Hybrid assembly with long and short reads improves discovery of gene family expansions

scientific article

Initial genome sequencing of the sugarcane CP 96-1252 complex hybrid

scientific article published on 17 May 2017

Predicting the functional effect of amino acid substitutions and indels

scientific article

Regulation of Parent-of-Origin Allelic Expression in the Endosperm

scientific article published on 07 May 2019

Structure, function and diversity of the healthy human microbiome

scientific article

ThaleMine: A Warehouse for Arabidopsis Data Integration and Discovery

scientific article

The Atlantic salmon genome provides insights into rediploidization

scientific article

The Genome Sequence of the Malaria Mosquito Anopheles gambiae

scientific article

The bonobo genome compared with the chimpanzee and human genomes

scientific article

ThurGood: Evaluating Assembly-to-Assembly Mapping

scientific article published on 01 January 2004

ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology.

scientific article published on 14 August 2017

List of works by Jason R. Miller

A catalog of reference genomes from the human microbiome

A comparison of whole-genome shotgun-derived mouse chromosome 16 and the human genome

A draft genome sequence for the Ixodes scapularis cell line, ISE6.

A host subtraction database for virus discovery in human cell line sequencing data

A host subtraction database for virus discovery in human cell line sequencing data

A host subtraction database for virus discovery in human cell line sequencing data

Aggressive assembly of pyrosequencing reads with mates

An algorithm for automated closure during assembly

An improved genome assembly uncovers prolific tandem repeats in Atlantic cod

Analysis of the Aedes albopictus C6/36 genome provides insight into cell line utility for viral propagation

Araport: the Arabidopsis information portal

Assembly algorithms for next-generation sequencing data

Canu: scalable and accurate long-read assembly via adaptive k-mer weighting and repeat separation

Consensus generation and variant detection by Celera Assembler

Creating Python Algorithms to Mimic R Functions from the R Stats Package

Exploring structural variation and gene family architecture with De Novo assemblies of 15 Medicago genomes

Gene and alternative splicing annotation with AIR.

Genetic diversity and population structure of the endangered marsupial Sarcophilus harrisii (Tasmanian devil)

Genome sequence of Aedes aegypti, a major arbovirus vector

Genomic innovations, transcriptional plasticity and gene loss underlying the evolution and divergence of two highly polyphagous and invasive Helicoverpa pest species. ⬇️

Genomic insights into the Ixodes scapularis tick vector of Lyme disease

Hybrid assembly with long and short reads improves discovery of gene family expansions

Initial genome sequencing of the sugarcane CP 96-1252 complex hybrid

Predicting the functional effect of amino acid substitutions and indels

Regulation of Parent-of-Origin Allelic Expression in the Endosperm

Structure, function and diversity of the healthy human microbiome

ThaleMine: A Warehouse for Arabidopsis Data Integration and Discovery

The Atlantic salmon genome provides insights into rediploidization

The Genome Sequence of the Malaria Mosquito Anopheles gambiae

The bonobo genome compared with the chimpanzee and human genomes

ThurGood: Evaluating Assembly-to-Assembly Mapping

ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology.