Search filters

List of works by Sophia Tsoka

A systems model for immune cell interactions unravels the mechanism of inflammation in human skin

scientific article

An immunologically relevant rodent model demonstrates safety of therapy using a tumour-specific IgE.

scientific article published on 13 April 2018

Anti-Folate Receptor-α IgE but not IgG Recruits Macrophages to Attack Tumors via TNFα/MCP-1 Signaling

scientific article published on 17 January 2017

Automated metabolic reconstruction for Methanococcus jannaschii

scientific article published on October 2004

Beyond 100 genomes

scientific article

CAST: an iterative algorithm for the complexity analysis of sequence tracts. Complexity analysis of sequence tracts.

scientific article published in October 2000

Chondroitin Sulfate Proteoglycan 4 and Its Potential As an Antibody Immunotherapy Target across Different Tumor Types.

scientific article published in January 2017

CoGenT++: an extensive and extensible data environment for computational genomics

scientific article

Community structure detection for overlapping modules through mathematical programming in protein interaction networks

scientific article

Computational analysis of Plasmodium falciparum metabolism: organizing genomic information to facilitate drug discovery

scientific article published on 12 April 2004

CytoASP: a Cytoscape app for qualitative consistency reasoning, prediction and repair in biological networks

scientific article published on 11 July 2015

Detection of composite communities in multiplex biological networks

scientific article

DyCoNet: a Gephi plugin for community detection in dynamic complex networks.

scientific article

Evaluation of annotation strategies using an entire genome sequence

scientific article

Expansion of the BioCyc collection of pathway/genome databases to 160 genomes

scientific article

Functional Genomics Assistant (FUGA): a toolbox for the analysis of complex biological networks

scientific article

Functional and topological properties in hepatocellular carcinoma transcriptome

scientific article

Functional versatility and molecular diversity of the metabolic map of Escherichia coli.

scientific article

Gene network and proteomic analyses of cardiac responses to pathological and physiological stress.

scientific article

Genome evolution reveals biochemical networks and functional modules

scientific article

Genome-wide expression patterns in physiological cardiac hypertrophy

scientific article

Immune mediator expression signatures are associated with improved outcome in ovarian carcinoma

scientific article published on 28 March 2019

Integrative biology approach identifies cytokine targeting strategies for psoriasis

scientific article

Link Prediction Methods and Their Accuracy for Different Social Networks and Network Metrics

MINLP models for the synthesis of optimal peptide tags and downstream protein processing

scientific article published in May 2005

Mapping cis- and trans-regulatory effects across multiple tissues in twins

scientific article published on 02 September 2012

Metabolic database systems for the analysis of genome-wide function

scientific article published on December 2003

Metabolic homeostasis is maintained in myocardial hibernation by adaptive changes in the transcriptome and proteome

scientific article published on 24 February 2011

Microbe-host interplay in atopic dermatitis and psoriasis

scientific article published on 16 October 2019

Microbial and transcriptional differences elucidate atopic dermatitis heterogeneity across skin sites

scientific article published on 01 October 2020

Modeling the percolation of annotation errors in a database of protein sequences

scientific article published on 01 December 2002

Module detection in complex networks using integer optimisation

scientific article published on 12 November 2010

Network-based data integration for selecting candidate virulence associated proteins in the cereal infecting fungus Fusarium graminearum

scientific article

Network-based piecewise linear regression for QSAR modelling

scientific article published on 01 September 2019

Optimal Piecewise Linear Regression Algorithm for QSAR Modelling

scientific article published on 24 September 2018

Pathway activity inference for multiclass disease classification through a mathematical programming optimisation framework

scientific article

Pathway-level disease data mining through hyper-box principles.

scientific article

Percolation of annotation errors through hierarchically structured protein sequence databases

scientific article published on 01 February 2005

Prediction of protein interactions: metabolic enzymes are frequently involved in gene fusion

scientific article published on 01 October 2000

Promoter complexity and tissue-specific expression of stress response components in Mytilus galloprovincialis, a sessile marine invertebrate species

scientific article

Protein coalitions in a core mammalian biochemical network linked by rapidly evolving proteins

scientific article

Rapid monitoring of virus-like particles using an optical biosensor: a feasibility study

scientific article published in August 1998

Reactome Pengine: a web-logic API to the Homo sapiens reactome

scientific article published on 01 August 2018

Recent developments and future directions in computational genomics

scientific article

Reproducibility in genome sequence annotation: the Plasmodium falciparum chromosome 2 case

scientific article published on 01 May 1999

Robustness of the p53 network and biological hackers

scientific article published in June 2005

Stratification of co-evolving genomic groups using ranked phylogenetic profiles

scientific article

The phylogenetic extent of metabolic enzymes and pathways

scientific article published on March 2003

The pruritus- and TH2-associated cytokine IL-31 promotes growth of sensory nerves

scientific article published on 6 April 2016

Toward prediction of immune mechanisms and design of immunotherapies in melanoma

scientific article published on January 2012

Transcriptome classification reveals molecular subtypes in psoriasis

scientific article

Using ILP to Identify Pathway Activation Patterns in Systems Biology

scientific article

Virus-like particle analysis in yeast homogenate using a laser light-scattering assay.

scientific article

Paulina is supported by:

About Paulina

Help