List of works - Annemie Geeraerd

2,3-Butanediol fermentation promotes growth of Serratia plymuthica at low pH but not survival of extreme acid challenge.

scientific article published on 4 February 2014

A transcriptomics-based kinetic model for ethylene biosynthesis in tomato (Solanum lycopersicum) fruit: development, validation and exploration of novel regulatory mechanisms

scientific article published on 21 January 2014

An educationally inspired illustration of two-dimensional Quantitative Microbiological Risk Assessment (QMRA) and sensitivity analysis.

scientific article published on 4 August 2014

Analysis of a novel class of predictive microbial growth models and application to coculture growth.

scientific article published on 15 December 2004

Application of artificial neural networks as a non-linear modular modeling technique to describe bacterial growth in chilled food products.

scientific article published in October 1998

Campylobacter contamination in broiler carcasses and correlation with slaughterhouses operational hygiene inspection

scientific article

Combinations of pulsed white light and UV-C or mild heat treatment to inactivate conidia of Botrytis cinerea and Monilia fructigena

scientific article published on 01 August 2003

Design of an experimental viscoelastic food model system for studying Zygosaccharomyces bailii spoilage in acidic sauces

scientific article published on 25 September 2009

Determination of S-adenosyl-l-methionine in fruits by capillary electrophoresis

scientific article published on November 2010

Development of a novel approach for secondary modelling in predictive microbiology: incorporation of microbiological knowledge in black box polynomial modelling.

scientific article published on March 2004

Development of predictive modelling approaches for surface temperature and associated microbiological inactivation during hot dry air decontamination.

scientific article published on 13 December 2004

Digital microfluidics for time-resolved cytotoxicity studies on single non-adherent yeast cells

scientific article published on April 2015

Dynamic changes of the ethylene biosynthesis in 'Jonagold' apple

scientific article published on 13 September 2013

Effect of environmental parameters (temperature, pH and a(w)) on the individual cell lag phase and generation time of Listeria monocytogenes

scientific article

Effect of pH, water activity and gel micro-structure, including oxygen profiles and rheological characterization, on the growth kinetics of Salmonella Typhimurium

scientific article published on 3 July 2008

Effect of preincubation temperature and pH on the individual cell lag phase of Listeria monocytogenes, cultured at refrigeration temperatures.

scientific article published on 25 April 2006

Effectiveness of inactivation of foodborne pathogens during simulated home pan frying of steak, hamburger or meat strips

scientific article

Environmental factors influencing the relationship between optical density and cell count for Listeria monocytogenes

scientific article

Estimating distributions out of qualitative and (semi)quantitative microbiological contamination data for use in risk assessment.

scientific article

Estimating the probability and level of contamination with Salmonella of feed for finishing pigs produced in Switzerland--the impact of the production pathway

scientific article published on 15 December 2004

Evaluation of a mathematical model structure describing the effect of (gel) structure on the growth of Listeria innocua, Lactococcus lactis and Salmonella Typhimurium.

scientific article published on 26 March 2009

Evaluation of fast volatile analysis for detection of Botrytis cinerea infections in strawberry

scientific article published on 11 August 2012

Extracting information on the evolution of living- and dead-cell fractions of Salmonella Typhimurium colonies in gelatin gels based on microscopic images and plate-count data.

scientific article

Formate hydrogen lyase mediates stationary-phase deacidification and increases survival during sugar fermentation in acetoin-producing enterobacteria.

scientific article published on 25 February 2015

GInaFiT, a freeware tool to assess non-log-linear microbial survivor curves.

scientific article published in June 2005

Hierarchical Bayesian analysis of censored microbiological contamination data for use in risk assessment and mitigation.

scientific article

High pressure carbon dioxide inactivation of microorganisms in foods: the past, the present and the future.

scientific article published on 12 March 2007

Identification of non-linear microbial inactivation kinetics under dynamic conditions

scientific article published on 11 July 2008

Inactivation model equations and their associated parameter values obtained under static acid stress conditions cannot be used directly for predicting inactivation under dynamic conditions.

scientific article published on 15 June 2008

Inactivation of conidia of Botrytis cinerea and Monilinia fructigena using UV-C and heat treatment

scientific article published on 01 March 2002

Individual and combined effects of ph and lactic acid concentration on Listeria innocua inactivation: development of a predictive model and assessment of experimental variability

scientific article

Influence of pH, water activity and acetic acid concentration on Listeria monocytogenes at 7 degrees C: data collection for the development of a growth/no growth model.

scientific article

Influence of type of microorganism, food ingredients and food properties on high-pressure carbon dioxide inactivation of microorganisms

scientific article published on 10 December 2008

Introducing optimal experimental design in predictive modeling: a motivating example.

scientific article

Kinetic model-based prediction of the persistence of Salmonella enterica serovar Typhimurium under tropical agricultural field conditions.

scientific article published on 21 February 2011

Membrane permeabilization and cellular death of Escherichia coli, Listeria monocytogenes and Saccharomyces cerevisiae as induced by high pressure carbon dioxide treatment

scientific article published on 22 December 2009

Metabolic profiling reveals ethylene mediated metabolic changes and a coordinated adaptive mechanism of 'Jonagold' apple to low oxygen stress.

scientific article published on 29 May 2015

Modeling individual cell lag time distributions for Listeria monocytogenes

scientific article published in February 2007

Modeling the fate of Escherichia coli O157:H7 and Salmonella enterica in the agricultural environment: current perspective.

scientific article published on 25 March 2014

Modelling Yersinia enterocolitica inactivation in coculture experiments with Lactobacillus sakei as based on pH and lactic acid profiles.

scientific article published on 28 July 2006

Modelling of the individual and combined effects of water activity and temperature on the radial growth of Aspergillus flavus and A. parasiticus on corn

scientific article

Modelling the combined effects of structured food model system and lactic acid on Listeria innocua and Lactococcus lactis growth in mono- and coculture.

scientific article published on 13 June 2007

Modelling the growth/no growth boundary of Zygosaccharomyces bailii in acidic conditions: a contribution to the alternative method to preserve foods without using chemical preservatives

scientific article published on 29 October 2009

Modelling the individual cell lag phase. Isolating single cells: protocol development

scientific article published in January 2003

Modelling the individual cell lag phase: effect of temperature and pH on the individual cell lag distribution of Listeria monocytogenes

scientific article published on 23 November 2004

Modelling the influence of the inoculation level on the growth/no growth interface of Listeria monocytogenes as a function of pH, aw and acetic acid.

scientific article published on 8 August 2009

Modelling the unexpected effect of acetic and lactic acid in combination with pH and aw on the growth/no growth interface of Zygosaccharomyces bailii.

scientific article published on 4 March 2008

Multi-objective experimental design for (13)C-based metabolic flux analysis.

scientific article published on 8 August 2015

Multi-response optimization of the extraction and derivatization protocol of selected polar metabolites from apple fruit tissue for GC–MS analysis

scientific article published on 25 March 2014

On the critical evaluation of growth/no growth assessment of Zygosaccharomyces bailii with optical density measurements: Liquid versus structured media

scientific article published on 11 June 2010

On the selection of relevant environmental factors to predict microbial dynamics in solidified media

scientific article

Pectin modifications and the role of pectin-degrading enzymes during postharvest softening of Jonagold apples.

scientific article

Predictive modelling and validation of Listeria innocua growth at superatmospheric oxygen and carbon dioxide concentrations

scientific article

Predictive modelling of the individual and combined effect of water activity and temperature on the radial growth of Fusarium verticilliodes and F. proliferatum on corn

scientific article published on 25 July 2005

Protocol: An updated integrated methodology for analysis of metabolites and enzyme activities of ethylene biosynthesis.

scientific article

Quantification of the influence of trimethylamine-N-oxide (TMAO) on the heat resistance of Escherichia coli K12 at lethal temperatures.

scientific article published on 22 December 2010

Reflections on the use of robust and least-squares non-linear regression to model challenge tests conducted in/on food products

article

Rhizosphere effect on survival of Escherichia coli O157:H7 and Salmonella enterica serovar Typhimurium in manure-amended soil during cabbage (Brassica oleracea) cultivation under tropical field conditions in Sub-Saharan Africa

scientific article published on 25 June 2011

S-adenosyl-L-methionine usage during climacteric ripening of tomato in relation to ethylene and polyamine biosynthesis and transmethylation capacity

scientific article published on 26 October 2012

Sensitivity analysis of a two-dimensional quantitative microbiological risk assessment: keeping variability and uncertainty separated

scientific article published on 18 March 2011

Shelf life of modified atmosphere packed cooked meat products: addition of Na-lactate as a fourth shelf life determinative factor in a model and product validation

scientific article published in June 2000

Structural model requirements to describe microbial inactivation during a mild heat treatment

scientific article published on September 2000

Targeted systems biology profiling of tomato fruit reveals coordination of the Yang cycle and a distinct regulation of ethylene biosynthesis during postclimacteric ripening.

scientific article published on 13 September 2012

The development of Escherichia coli and Listeria monocytogenes variants resistant to high-pressure carbon dioxide inactivation.

scientific article

The importance of expressing antimicrobial agents on water basis in growth/no growth interface models: a case study for Zygosaccharomyces bailii

scientific article published on 8 January 2011

The metabolic response of cultured tomato cells to low oxygen stress

scientific article published on 30 September 2013

Tissue specific analysis reveals a differential organization and regulation of both ethylene biosynthesis and E8 during climacteric ripening of tomato.

scientific article published on 8 January 2014

Towards a novel class of predictive microbial growth models

scientific article published on 15 December 2004

Towards the quantification of the effect of acid treatment on the heat tolerance of Escherichia coli K12 at lethal temperatures.

scientific article

Transfer and internalisation of Escherichia coli O157:H7 and Salmonella enterica serovar Typhimurium in cabbage cultivated on contaminated manure-amended soil under tropical field conditions in Sub-Saharan Africa.

scientific article published on 14 January 2011

Using survival analysis to investigate the effect of UV-C and heat treatment on storage rot of strawberry and sweet cherry

article

Validation of a model for growth of Lactococcus lactis and Listeria innocua in a structured gel system: effect of monopotassium phosphate.

scientific article

Validation of predictive growth models describing superatmospheric oxygen effects on Pseudomonas fluorescens and Listeria innocua on fresh-cut lettuce.

scientific article published on 23 June 2006

Variability in growth/no growth boundaries of 188 different Escherichia coli strains reveals that approximately 75% have a higher growth probability under low pH conditions than E. coli O157:H7 strain ATCC 43888.

scientific article published on 12 July 2014

List of works by Annemie Geeraerd

2,3-Butanediol fermentation promotes growth of Serratia plymuthica at low pH but not survival of extreme acid challenge.

A transcriptomics-based kinetic model for ethylene biosynthesis in tomato (Solanum lycopersicum) fruit: development, validation and exploration of novel regulatory mechanisms

An educationally inspired illustration of two-dimensional Quantitative Microbiological Risk Assessment (QMRA) and sensitivity analysis.

Analysis of a novel class of predictive microbial growth models and application to coculture growth.

Application of artificial neural networks as a non-linear modular modeling technique to describe bacterial growth in chilled food products.

Campylobacter contamination in broiler carcasses and correlation with slaughterhouses operational hygiene inspection

Combinations of pulsed white light and UV-C or mild heat treatment to inactivate conidia of Botrytis cinerea and Monilia fructigena

Design of an experimental viscoelastic food model system for studying Zygosaccharomyces bailii spoilage in acidic sauces

Determination of S-adenosyl-l-methionine in fruits by capillary electrophoresis

Development of a novel approach for secondary modelling in predictive microbiology: incorporation of microbiological knowledge in black box polynomial modelling.

Development of predictive modelling approaches for surface temperature and associated microbiological inactivation during hot dry air decontamination.

Digital microfluidics for time-resolved cytotoxicity studies on single non-adherent yeast cells

Dynamic changes of the ethylene biosynthesis in 'Jonagold' apple

Effect of environmental parameters (temperature, pH and a(w)) on the individual cell lag phase and generation time of Listeria monocytogenes

Effect of pH, water activity and gel micro-structure, including oxygen profiles and rheological characterization, on the growth kinetics of Salmonella Typhimurium

Effect of preincubation temperature and pH on the individual cell lag phase of Listeria monocytogenes, cultured at refrigeration temperatures.

Effectiveness of inactivation of foodborne pathogens during simulated home pan frying of steak, hamburger or meat strips

Environmental factors influencing the relationship between optical density and cell count for Listeria monocytogenes

Estimating distributions out of qualitative and (semi)quantitative microbiological contamination data for use in risk assessment.

Estimating the probability and level of contamination with Salmonella of feed for finishing pigs produced in Switzerland--the impact of the production pathway

Evaluation of a mathematical model structure describing the effect of (gel) structure on the growth of Listeria innocua, Lactococcus lactis and Salmonella Typhimurium.

Evaluation of fast volatile analysis for detection of Botrytis cinerea infections in strawberry

Extracting information on the evolution of living- and dead-cell fractions of Salmonella Typhimurium colonies in gelatin gels based on microscopic images and plate-count data.

Formate hydrogen lyase mediates stationary-phase deacidification and increases survival during sugar fermentation in acetoin-producing enterobacteria.

GInaFiT, a freeware tool to assess non-log-linear microbial survivor curves.

Hierarchical Bayesian analysis of censored microbiological contamination data for use in risk assessment and mitigation.

High pressure carbon dioxide inactivation of microorganisms in foods: the past, the present and the future.

Identification of non-linear microbial inactivation kinetics under dynamic conditions

Inactivation model equations and their associated parameter values obtained under static acid stress conditions cannot be used directly for predicting inactivation under dynamic conditions.

Inactivation of conidia of Botrytis cinerea and Monilinia fructigena using UV-C and heat treatment

Individual and combined effects of ph and lactic acid concentration on Listeria innocua inactivation: development of a predictive model and assessment of experimental variability

Influence of pH, water activity and acetic acid concentration on Listeria monocytogenes at 7 degrees C: data collection for the development of a growth/no growth model.

Influence of type of microorganism, food ingredients and food properties on high-pressure carbon dioxide inactivation of microorganisms

Introducing optimal experimental design in predictive modeling: a motivating example.

Kinetic model-based prediction of the persistence of Salmonella enterica serovar Typhimurium under tropical agricultural field conditions.

Membrane permeabilization and cellular death of Escherichia coli, Listeria monocytogenes and Saccharomyces cerevisiae as induced by high pressure carbon dioxide treatment

Metabolic profiling reveals ethylene mediated metabolic changes and a coordinated adaptive mechanism of 'Jonagold' apple to low oxygen stress.

Modeling individual cell lag time distributions for Listeria monocytogenes

Modeling the fate of Escherichia coli O157:H7 and Salmonella enterica in the agricultural environment: current perspective.

Modelling Yersinia enterocolitica inactivation in coculture experiments with Lactobacillus sakei as based on pH and lactic acid profiles.

Modelling of the individual and combined effects of water activity and temperature on the radial growth of Aspergillus flavus and A. parasiticus on corn

Modelling the combined effects of structured food model system and lactic acid on Listeria innocua and Lactococcus lactis growth in mono- and coculture.

Modelling the growth/no growth boundary of Zygosaccharomyces bailii in acidic conditions: a contribution to the alternative method to preserve foods without using chemical preservatives

Modelling the individual cell lag phase. Isolating single cells: protocol development

Modelling the individual cell lag phase: effect of temperature and pH on the individual cell lag distribution of Listeria monocytogenes

Modelling the influence of the inoculation level on the growth/no growth interface of Listeria monocytogenes as a function of pH, aw and acetic acid.

Modelling the unexpected effect of acetic and lactic acid in combination with pH and aw on the growth/no growth interface of Zygosaccharomyces bailii.

Multi-objective experimental design for (13)C-based metabolic flux analysis.

Multi-response optimization of the extraction and derivatization protocol of selected polar metabolites from apple fruit tissue for GC–MS analysis

On the critical evaluation of growth/no growth assessment of Zygosaccharomyces bailii with optical density measurements: Liquid versus structured media

On the selection of relevant environmental factors to predict microbial dynamics in solidified media

Pectin modifications and the role of pectin-degrading enzymes during postharvest softening of Jonagold apples.

Predictive modelling and validation of Listeria innocua growth at superatmospheric oxygen and carbon dioxide concentrations

Predictive modelling of the individual and combined effect of water activity and temperature on the radial growth of Fusarium verticilliodes and F. proliferatum on corn

Protocol: An updated integrated methodology for analysis of metabolites and enzyme activities of ethylene biosynthesis.

Quantification of the influence of trimethylamine-N-oxide (TMAO) on the heat resistance of Escherichia coli K12 at lethal temperatures.

Reflections on the use of robust and least-squares non-linear regression to model challenge tests conducted in/on food products

Rhizosphere effect on survival of Escherichia coli O157:H7 and Salmonella enterica serovar Typhimurium in manure-amended soil during cabbage (Brassica oleracea) cultivation under tropical field conditions in Sub-Saharan Africa

S-adenosyl-L-methionine usage during climacteric ripening of tomato in relation to ethylene and polyamine biosynthesis and transmethylation capacity

Sensitivity analysis of a two-dimensional quantitative microbiological risk assessment: keeping variability and uncertainty separated

Shelf life of modified atmosphere packed cooked meat products: addition of Na-lactate as a fourth shelf life determinative factor in a model and product validation

Structural model requirements to describe microbial inactivation during a mild heat treatment

Targeted systems biology profiling of tomato fruit reveals coordination of the Yang cycle and a distinct regulation of ethylene biosynthesis during postclimacteric ripening.

The development of Escherichia coli and Listeria monocytogenes variants resistant to high-pressure carbon dioxide inactivation.

The importance of expressing antimicrobial agents on water basis in growth/no growth interface models: a case study for Zygosaccharomyces bailii

The metabolic response of cultured tomato cells to low oxygen stress

Tissue specific analysis reveals a differential organization and regulation of both ethylene biosynthesis and E8 during climacteric ripening of tomato.

Towards a novel class of predictive microbial growth models

Towards the quantification of the effect of acid treatment on the heat tolerance of Escherichia coli K12 at lethal temperatures.

Transfer and internalisation of Escherichia coli O157:H7 and Salmonella enterica serovar Typhimurium in cabbage cultivated on contaminated manure-amended soil under tropical field conditions in Sub-Saharan Africa.

Using survival analysis to investigate the effect of UV-C and heat treatment on storage rot of strawberry and sweet cherry

Validation of a model for growth of Lactococcus lactis and Listeria innocua in a structured gel system: effect of monopotassium phosphate.

Validation of predictive growth models describing superatmospheric oxygen effects on Pseudomonas fluorescens and Listeria innocua on fresh-cut lettuce.

Variability in growth/no growth boundaries of 188 different Escherichia coli strains reveals that approximately 75% have a higher growth probability under low pH conditions than E. coli O157:H7 strain ATCC 43888.