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List of works by Anna E Sheppard

A Candida auris Outbreak and Its Control in an Intensive Care Setting

article

A curated dataset of complete Enterobacteriaceae plasmids compiled from the NCBI nucleotide database.

scientific article

Capsular Typing Method for Streptococcus agalactiae Using Whole-Genome Sequence Data

scientific article

Chromosomal Integration of the Klebsiella pneumoniae Carbapenemase Gene, blaKPC, in Klebsiella Species Is Elusive but Not Rare

scientific article

Comparison of long-read sequencing technologies in the hybrid assembly of complex bacterial genomes

scientific article published on 30 August 2019

Complete Genome Sequence of Bacillus thuringiensis Strain 407 Cry-.

scientific article published on 31 January 2013

Complete Genome Sequence of KPC-Producing Klebsiella pneumoniae Strain CAV1193.

scientific article

Complete Sequencing of Plasmids Containing blaOXA-163 and blaOXA-48 in Escherichia coli Sequence Type 131.

scientific article published on 06 September 2016

Complete genome sequence of the nematicidal Bacillus thuringiensis MYBT18247.

scientific article published on 9 September 2017

Corrigendum: Resolving plasmid structures in Enterobacteriaceae using the MinION nanopore sequencer: assessment of MinION and MinION/Illumina hybrid data assembly approaches.

scientific article published on 29 March 2018

Dissemination of multiple carbapenem resistance genes in an in vitro gut model simulating the human colon

scientific article published on 01 July 2019

Don't overlook the little guy: An evaluation of the frequency of small plasmids co-conjugating with larger carbapenemase gene containing plasmids

scientific article published on 27 March 2019

Dynamics of MDR Enterobacter cloacae outbreaks in a neonatal unit in Nepal: insights using wider sampling frames and next-generation sequencing

scientific article published on 3 January 2015

Enhanced Klebsiella pneumoniae Carbapenemase Expression from a Novel Tn4401 Deletion

scientific article

Epidemiology of paediatric gastrointestinal colonisation by extended spectrum cephalosporin-resistant Escherichia coli and Klebsiella pneumoniae isolates in north-west Cambodia

scientific article published on 16 August 2017

Epidemiology of paediatric gastrointestinal colonisation by extended spectrum cephalosporin-resistant Escherichia coli and Klebsiella pneumoniae isolates in north-west Cambodia

scientific article published on 12 March 2019

Evolutionary History of the Global Emergence of the Escherichia coli Epidemic Clone ST131

scientific article published on 22 March 2016

Evolutionary history of the global emergence of the Escherichia coli epidemic clone ST131

scholarly article published 6 November 2015

First Report of blaIMP-14 on a Plasmid Harboring Multiple Drug Resistance Genes in Escherichia coli Sequence Type 131.

scientific article published on 31 May 2016

Genome sequencing of an extended series of NDM-producing Klebsiella pneumoniae isolates from neonatal infections in a Nepali hospital characterizes the extent of community- versus hospital-associated transmission in an endemic setting

scientific article published on 29 September 2014

Genomic epidemiology of global Klebsiella pneumoniae carbapenemase (KPC)-producing E. coli

Genomic epidemiology of global Klebsiella pneumoniae carbapenemase (KPC)-producing Escherichia coli.

scientific article

High instability of a nematicidal Cry toxin plasmid in Bacillus thuringiensis

scientific article

High rates of human fecal carriage of mcr-1-positive multi-drug resistant Enterobacteriaceae isolates emerge in China in association with successful plasmid families.

scientific article published on 10 October 2017

Horizontal Transfer of Carbapenemase-Encoding Plasmids and Comparison with Hospital Epidemiology Data

scientific article

Host-Pathogen Coevolution: The Selective Advantage of Bacillus thuringiensis Virulence and Its Cry Toxin Genes

scientific article

Instability of plastid DNA in the nuclear genome

scientific article

Introducing an RNA editing requirement into a plastid-localised transgene reduces but does not eliminate functional gene transfer to the nucleus

scientific article published on 15 March 2011

Klebsiella pneumoniae carbapenemase (KPC)-producing K. pneumoniae at a single institution: insights into endemicity from whole-genome sequencing

scientific article

Klebsiella quasipneumoniae Provides a Window into Carbapenemase Gene Transfer, Plasmid Rearrangements, and Patient Interactions with the Hospital Environment.

scientific article published on 24 May 2019

Maternal colonization with Streptococcus agalactiae and associated stillbirth and neonatal disease in coastal Kenya

scientific article published on 23 May 2016

Nested Russian Doll-Like Genetic Mobility Drives Rapid Dissemination of the Carbapenem Resistance Gene blaKPC

scientific article published on 11 April 2016

Nested Russian Doll-like Genetic Mobility Drives Rapid Dissemination of the Carbapenem Resistance GeneblaKPC

article

Ordering the mob: Insights into replicon and MOB typing schemes from analysis of a curated dataset of publicly available plasmids

scientific article published on 9 March 2017

Plasmid Classification in an Era of Whole-Genome Sequencing: Application in Studies of Antibiotic Resistance Epidemiology

scientific article published on 09 February 2017

Reconciling the potentially irreconcilable? Genotypic and phenotypic amoxicillin-clavulanate resistance in Escherichia coli

scientific article published on 23 March 2020

Reconciling the potentially irreconcilable? Genotypic and phenotypic amoxicillin-clavulanate resistance in Escherichia coli : Supplementary Materials

scholarly article published 7 January 2019

Resolving plasmid structures in Enterobacteriaceae using the MinION nanopore sequencer: assessment of MinION and MinION/Illumina hybrid data assembly approaches

scientific article published on 9 June 2017

Severe infections emerge from commensal bacteria by adaptive evolution

scientific article published on 19 December 2017

Severe infections emerge from the microbiome by adaptive evolution

Streptococcus agalactiae that caused meningitis in healthy adults in 1998 are ST283, the same type that caused a food-borne outbreak of invasive sepsis in 2015: an observational molecular epidemiology study

scientific article published on 12 April 2018

TETyper: a bioinformatic pipeline for classifying variation and genetic contexts of transposable elements from short-read whole-genome sequencing data

scientific article published on 23 March 2018

TETyper: a bioinformatic pipeline for classifying variation and genetic contexts of transposable elements from short-read whole-genome sequencing data

article

The Role of fosA in Challenges with Fosfomycin Susceptibility Testing of Multispecies Klebsiella pneumoniae Carbapenemase-Producing Clinical Isolates

scientific article published on 24 September 2019

The Stealthy Superbug: the Role of Asymptomatic Enteric Carriage in Maintaining a Long-Term Hospital Outbreak of ST228 Methicillin-Resistant Staphylococcus aureus

scientific article published on 19 January 2016

Transfer of plastid DNA to the nucleus is elevated during male gametogenesis in tobacco

scientific article published on 25 July 2008

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