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List of works by Mauricio Barahona

A dominated coupling from the past algorithm for the stochastic simulation of networks of biochemical reactions

scientific article

A dynamical model of lipoprotein metabolism

scientific article

A modular cell-based biosensor using engineered genetic logic circuits to detect and integrate multiple environmental signals

scientific article published on 23 August 2012

Algorithm 1044: PyGenStability, a Multiscale Community Detection Framework with Generalized Markov Stability

scientific article published on 11 March 2024

Allostery and cooperativity in multimeric proteins: bond-to-bond propensities in ATCase

scientific article published on 23 July 2018

Amplification of small molecule-inducible gene expression via tuning of intracellular receptor densities

scientific article published on February 2015

Biophysical regulation of lipid biosynthesis in the plasma membrane

scientific article published on 11 January 2008

Bounding the stationary distributions of the chemical master equation via mathematical programming

scientific article published on 01 July 2019

Chemistry across scales: from molecules to cells.

scientific article published on December 2007

Combinatorial stresses kill pathogenic Candida species.

scientific article published on 2 April 2012

Compound stress response in stomatal closure: a mathematical model of ABA and ethylene interaction in guard cells.

scientific article

Computational Re-design of Synthetic Genetic Oscillators for Independent Amplitude and Frequency Modulation

scientific article published on 18 April 2018

Crowding-induced anisotropic transport modulates reaction kinetics in nanoscale porous media.

scientific article published in April 2010

Data-driven unsupervised clustering of online learner behaviour

scientific article published on 03 September 2019

Dynamics of one-dimensional Josephson-junction arrays

article

Emergence of Slow-Switching Assemblies in Structured Neuronal Networks ⬇️

scientific article published on 15 July 2015

Encoding dynamics for multiscale community detection: Markov time sweeping for the map equation ⬇️

scientific article published on August 21, 2012

Engineering and ethical perspectives in synthetic biology. Rigorous, robust and predictable designs, public engagement and a modern ethical framework are vital to the continued success of synthetic biology

scientific article

Engineering modular and tunable genetic amplifiers for scaling transcriptional signals in cascaded gene networks

scientific article

Erratum: Superconducting states and depinning transitions of Josephson ladders [Phys. Rev. B57, 1181 (1998)]

scholarly article by Mauricio Barahona et al published 1 September 1998 in Physical Review B

Flow graphs: Interweaving dynamics and structure

scientific article

Flow-Based Network Analysis of the Caenorhabditis elegans Connectome. ⬇️

scientific article

Flux-dependent graphs for metabolic networks

scientific article published on 14 August 2018

Full analogue electronic realisation of the Hodgkin-Huxley neuronal dynamics in weak-inversion CMOS.

scientific article published in January 2007

GlnK Facilitates the Dynamic Regulation of Bacterial Nitrogen Assimilation

scientific article published in May 2017

Graph partitions and cluster synchronization in networks of oscillators ⬇️

scientific article published on September 2016

Great cities look small. ⬇️

scientific article published on August 2015

Guiding interoperable electronic health records through patient-sharing networks

scientific article published on 10 December 2018

Hhex and Cer1 mediate the Sox17 pathway for cardiac mesoderm formation in embryonic stem cells

scientific article

Identifying naturally occurring communities of primary care providers in the English National Health Service in London

scientific article published on 20 July 2020

Integrated Analysis of Patient Networks and Plasmid Genomes to Investigate a Regional, Multispecies Outbreak of Carbapenemase-Producing Enterobacterales Carrying Both <i>bla</i>IMP and <i>mcr-9</i> Genes

scientific article published in 2024

Interest communities and flow roles in directed networks: the Twitter network of the UK riots

scientific article

Introduction of a fluorescent probe to amyloid-β to reveal kinetic insights into its interactions with copper(II).

scientific article published on 21 December 2014

Kinetic Analysis Reveals the Identity of Aβ-Metal Complex Responsible for the Initial Aggregation of Aβ in the Synapse

scientific article published on 16 June 2017

Learning spatiotemporal signals using a recurrent spiking network that discretizes time

scientific article published on 21 January 2020

Linear models of activation cascades: analytical solutions and coarse-graining of delayed signal transduction

scientific article

Listening to Mental Health Crisis Needs at Scale: Using Natural Language Processing to Understand and Evaluate a Mental Health Crisis Text Messaging Service

scientific article published on 06 December 2021

Markov dynamics as a zooming lens for multiscale community detection: non clique-like communities and the field-of-view limit

scientific article (publication date: 2012)

New geographic model of care to manage the post-COVID-19 elective surgery aftershock in England: a retrospective observational study

scientific article published on 31 October 2020

Nitrogen and carbon status are integrated at the transcriptional level by the nitrogen regulator NtrC in vivo

scientific article published on 19 November 2013

Non-invasive suppression of essential tremor via phase-locked disruption of its temporal coherence

scientific article published on 13 January 2021

Observability and coarse graining of consensus dynamics through the external equitable partition.

scientific article published on 11 October 2013

PDGFRα demarcates the cardiogenic clonogenic Sca1+ stem/progenitor cell in adult murine myocardium

scientific article published on 18 May 2015

Patterns of healthcare utilisation in children and young people: a retrospective cohort study using routinely collected healthcare data in Northwest London

scientific article published on 17 December 2021

Perfect sampling of the master equation for gene regulatory networks

scientific article published on 27 April 2007

Pinned states in Josephson arrays: A general stability theorem

scholarly article in Physical Review B, vol. 58 no. 9, September 1998

Precision identification of high-risk phenotypes and progression pathways in severe malaria without requiring longitudinal data

scientific article published on 10 July 2019

Prediction of allosteric sites and mediating interactions through bond-to-bond propensities. ⬇️

scientific article published on 26 August 2016

Protein multi-scale organization through graph partitioning and robustness analysis: application to the myosin-myosin light chain interaction

scientific article published on 10 August 2011

ProteinLens: a web-based application for the analysis of allosteric signalling on atomistic graphs of biomolecules

scientific article published on 01 July 2021

Quantifying the Alignment of Graph and Features in Deep Learning

scientific article published in 2022

Revealing cell assemblies at multiple levels of granularity. ⬇️

scientific article published on 26 August 2014

Rewiring cell signalling through chimaeric regulatory protein engineering

scientific article

Robustness of random graphs based on graph spectra

scientific article published on 01 December 2012

SC3: consensus clustering of single-cell RNA-seq data

scientific article

Self-assembled, deterministic carbon nanotube wiring networks

scientific article published in January 2002

Squeeze-and-breathe evolutionary Monte Carlo optimization with local search acceleration and its application to parameter fitting

scientific article published on 19 January 2012

Stability of graph communities across time scales.

scientific article

Stochastic kinetics of viral capsid assembly based on detailed protein structures.

scientific article

Stochastic modelling reveals mechanisms of metabolic heterogeneity

scientific article published on 21 March 2019

Stochastic models of gene transcription with upstream drives: exact solution and sample path characterization ⬇️

scientific article published on January 2017

Superconducting energy gap in MBa

scientific article published on 01 January 1988

Superconducting states and depinning transitions of Josephson ladders

scholarly article by Mauricio Barahona et al published 1 January 1998 in Physical Review B

Switchable genetic oscillator operating in quasi-stable mode

scientific article published on 22 January 2010

Synchronization in small-world systems

scientific article published on 16 July 2002

Systems level profiling of chemotherapy-induced stress resolution in cancer cells reveals druggable trade-offs

scientific article published in 2021

The effect of spatially inhomogeneous extracellular electric fields on neurons

scientific article

The ‘who’ and ‘what’ of #diabetes on Twitter. ⬇️

scientific article published in January 2017

Toward Precision Healthcare: Context and Mathematical Challenges

scientific article published on 21 March 2017

Transcriptome-wide noise controls lineage choice in mammalian progenitor cells

scientific article

Transient dynamics around unstable periodic orbits in the generalized repressilator model

scientific article published on 01 June 2011

Tuning the dials of Synthetic Biology

scientific article

Uncovering allosteric pathways in caspase-1 using Markov transient analysis and multiscale community detection ⬇️

scientific article published on 01 August 2014

X-ray diffraction measurement of the monolayer spontaneous curvature of dioleoylphosphatidylglycerol

scientific article published on 22 March 2008

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