List of works by David Fredman

Adoption of conserved developmental genes in development and origin of the medusa body plan

scientific article

Ancora: a web resource for exploring highly conserved noncoding elements and their association with developmental regulatory genes

scientific article published on 15 February 2008

Axis Patterning by BMPs: Cnidarian Network Reveals Evolutionary Constraints.

scientific article published on 11 March 2015

Characterisation and localisation of the opsin protein repertoire in the brain and retinas of a spider and an onychophoran

scientific article

Cnidarian microRNAs frequently regulate targets by cleavage

scientific article (publication date: April 2014)

Complex SNP-related sequence variation in segmental genome duplications

scientific article

DFold: PCR design that minimizes secondary structure and optimizes downstream genotyping applications

scientific article published in July 2004

Employing BAC-reporter constructs in the sea anemone Nematostella vectensis

scientific article published on 16 August 2013

Evolutionary conservation of the eumetazoan gene regulatory landscape

scientific article published on 18 March 2014

Evolutionary turnover of mammalian transcription start sites

scientific article

Exonic remnants of whole-genome duplication reveal cis-regulatory function of coding exons

scientific article

Genetic structures of copy number variants revealed by genotyping single sperm

scientific article published on 22 April 2009

Genomic regulatory blocks encompass multiple neighboring genes and maintain conserved synteny in vertebrates

scientific article published on 26 March 2007

Long-range gene regulation links genomic type 2 diabetes and obesity risk regions to HHEX, SOX4, and IRX3

scientific article

Making enhancers from spare parts of the genome

scientific article published on 29 December 2011

Nonsynonymous SNPs: validation characteristics, derived allele frequency patterns, and suggestive evidence for natural selection.

scientific article

Recurrent horizontal transfer of bacterial toxin genes to eukaryotes

scientific article (publication date: September 2012)

Regulatory divergence of the duplicated chromosomal loci sox11a/b by subpartitioning and sequence evolution of enhancers in zebrafish

scientific article published on 29 December 2009

Retroviral enhancer detection insertions in zebrafish combined with comparative genomics reveal genomic regulatory blocks - a fundamental feature of vertebrate genomes

scientific article

SNP association studies in Alzheimer's disease highlight problems for complex disease analysis.

scientific article

Systematic human/zebrafish comparative identification of cis-regulatory activity around vertebrate developmental transcription factor genes.

scientific article published on 12 November 2008

The evolution of microRNA pathway protein components in Cnidaria

scientific article published on 11 September 2013

The phenotype and genotype experiment object model (PaGE-OM): a robust data structure for information related to DNA variation

scientific article

The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line.

scientific article

Transcriptional features of genomic regulatory blocks

scientific article published on 19 April 2009

Web-based tools and approaches to study long-range gene regulation in Metazoa

scientific article published on 15 July 2009

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