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List of works by Siladitya Padhi

Atomistic detailed mechanism and weak cation-conducting activity of HIV-1 Vpu revealed by free energy calculations

scientific article

Cooperation of Hydrophobic Gating, Knock-on Effect, and Ion Binding Determines Ion Selectivity in the p7 Channel

scientific article

Human aminolevulinate synthase structure reveals a eukaryotic-specific autoinhibitory loop regulating substrate binding and product release

scientific article published on 04 June 2020

Ion hydration dynamics in conjunction with a hydrophobic gating mechanism regulates ion permeation in p7 viroporin from hepatitis C virus

scientific article published on 8 May 2015

Microsecond simulation of human aquaporin 2 reveals structural determinants of water permeability and selectivity

scientific article

Molecular dynamics simulations reveal the HIV-1 Vpu transmembrane protein to form stable pentamers

scientific article

Prediction of the structures of helical membrane proteins based on a minimum unfavorable contacts approach.

scientific article

TPP riboswitch aptamer: Role of Mg2+ ions, ligand unbinding, and allostery

scientific article published on 25 January 2019

Urea Mimics Nucleobases by Preserving the Helical Integrity of B-DNA Duplexes via Hydrogen Bonding and Stacking Interactions.

scientific article

Urea-Aromatic Stacking and Concerted Urea Transport: Conserved Mechanisms in Urea Transporters Revealed by Molecular Dynamics

scientific article published on 30 August 2016

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