List of works - Peter N. Dodds

A Bacterial Type III Secretion Assay for Delivery of Fungal Effector Proteins into Wheat

scientific article published on 01 March 2014

A Near-Complete Haplotype-Phased Genome of the Dikaryotic Wheat Stripe Rust Fungus Puccinia striiformis f. sp. tritici Reveals High Interhaplotype Diversity.

scientific article published on 20 February 2018

A bacterial type III secretion-based delivery system for functional assays of fungal effectors in cereals.

scientific article published in January 2014

A chromosome-level, fully phased genome assembly of the oat crown rust fungus Puccinia coronata f. sp. avenae: a resource to enable comparative genomics in the cereal rusts

scientific article published in 2022

A five-transgene cassette confers broad-spectrum resistance to a fungal rust pathogen in wheat

scientific article published in 2021

A near complete haplotype-phased genome of the dikaryotic wheat stripe rust fungus Puccinia striiformis f. sp. tritici reveals high inter-haplotype diversity

article

A novel conserved mechanism for plant NLR protein pairs: the "integrated decoy" hypothesis

scientific article

A recently evolved hexose transporter variant confers resistance to multiple pathogens in wheat

scientific article published on 9 November 2015

A rust‐fungus Nudix hydrolase effector decaps <scp>mRNA</scp>in vitro and interferes with plant immune pathways

scientific article published in 2023

Advances and challenges in computational prediction of effectors from plant pathogenic fungi

scientific article published on 28 May 2015

An autoactive mutant of the M flax rust resistance protein has a preference for binding ATP, whereas wild-type M protein binds ADP.

scientific article published in August 2011

An overview of genetic rust resistance: From broad to specific mechanisms.

scientific article published on 13 July 2017

ApoplastP: prediction of effectors and plant proteins in the apoplast using machine learning.

scientific article published on 15 December 2017

Autoactive alleles of the flax L6 rust resistance gene induce non-race-specific rust resistance associated with the hypersensitive response

scientific article published in June 2005

Avirulence proteins from haustoria-forming pathogens.

scientific article published on 2 March 2007

Challenges and progress towards understanding the role of effectors in plant-fungal interactions.

scientific article

Changing the Game: Using Integrative Genomics to Probe Virulence Mechanisms of the Stem Rust Pathogen Puccinia graminis f. sp. tritici

scientific article

Comparative Analysis of the Flax Immune Receptors L6 and L7 Suggests an Equilibrium-Based Switch Activation Model

scientific article published on 7 January 2016

Comparative genomics of Australian isolates of the wheat stem rust pathogen Puccinia graminis f. sp. tritici reveals extensive polymorphism in candidate effector genes

scientific article

Computational Methods for Predicting Effectors in Rust Pathogens

scientific article

Constructing haustorium-specific cDNA libraries from rust fungi.

scientific article

Contrasting modes of evolution acting on the complex N locus for rust resistance in flax.

scientific article published on September 2001

Co‐evolutionary interactions between host resistance and pathogen effector genes in flax rust disease ⬇️

scientific article published on August 29, 2010

Crystal Structures of Flax Rust Avirulence Proteins AvrL567-A and -D Reveal Details of the Structural Basis for Flax Disease Resistance Specificity

scientific article

Crystal structure of the Melampsora lini effector AvrP reveals insights into a possible nuclear function and recognition by the flax disease resistance protein P.

scientific article published on 17 August 2017

Crystallization and X-ray diffraction analysis of the C-terminal domain of the flax rust effector protein AvrM.

scientific article published on 26 November 2011

Crystallization and preliminary X-ray diffraction analyses of the TIR domains of three TIR-NB-LRR proteins that are involved in disease resistance in Arabidopsis thaliana

scientific article published on 30 October 2013

Crystallization and preliminary X-ray diffraction analysis of the flax cytokinin oxidase LuCKX1.1.

scientific article published on 28 September 2013

Crystallization, X-ray diffraction analysis and preliminary structure determination of the TIR domain from the flax resistance protein L6.

scientific article

Cytosolic activation of cell death and stem rust resistance by cereal MLA-family CC-NLR proteins.

scientific article published on 23 August 2016

Dancing with the Stars: An Asterid NLR Family

scientific article

De Novo Assembly and Phasing of Dikaryotic Genomes from Two Isolates of Puccinia coronata f. sp. avenae, the Causal Agent of Oat Crown Rust.

scientific article published on 20 February 2018

De Novo Genome Assembly and Comparative Genomics of the Barley Leaf Rust Pathogen Puccinia hordei Identifies Candidates for Three Avirulence Genes

scientific article published on 07 October 2019

Direct protein interaction underlies gene-for-gene specificity and coevolution of the flax resistance genes and flax rust avirulence genes

scholarly article

Diversifying selection in the wheat stem rust fungus acts predominantly on pathogen-associated gene families and reveals candidate effectors

scientific article published on September 2014

Diversity and evolution of effector loci in natural populations of the plant pathogen Melampsora lini.

scientific article published on 24 July 2009

EffectorP: predicting fungal effector proteins from secretomes using machine learning

scientific article published on 17 December 2015

Emergence of the Ug99 lineage of the wheat stem rust pathogen through somatic hybridisation

scientific article published on 07 November 2019

Epidemiological and Evolutionary Outcomes in Gene-for-Gene and Matching Allele Models.

scientific article

Flax rust infection transcriptomics reveals a transcriptional profile that may be indicative for rust Avr genes

scientific article published on 12 December 2019

Flax rust resistance gene specificity is based on direct resistance-avirulence protein interactions.

scientific article published on January 2007

Further analysis of gene-for-gene disease resistance specificity in flax

scientific article published on 01 January 2007

Genome analysis and avirulence gene cloning using a high-density RADseq linkage map of the flax rust fungus, Melampsora lini.

scientific article

Genomic analysis of Xanthomonas translucens pathogenic on wheat and barley reveals cross-kingdom gene transfer events and diverse protein delivery systems

scientific article

Genomics accelerated isolation of a new stem rust avirulence gene–wheat resistance gene pair

scientific article published in 2021

Haustorially expressed secreted proteins from flax rust are highly enriched for avirulence elicitors

scientific article published on 2 December 2005

Improved prediction of fungal effector proteins from secretomes with EffectorP 2.0.

scientific article published on 22 March 2018

In the trenches of plant pathogen recognition: Role of NB-LRR proteins.

scientific article published on 04 May 2009

Increased virulence of Puccinia coronata f. sp.avenae populations through allele frequency changes at multiple putative Avr loci

scientific article published on 28 December 2020

Induced proximity of a TIR signaling domain on a plant-mammalian NLR chimera activates defense in plants

scientific article published on 24 July 2020

Internalization of flax rust avirulence proteins into flax and tobacco cells can occur in the absence of the pathogen

scientific article published on 4 June 2010

Intramolecular interaction influences binding of the Flax L5 and L6 resistance proteins to their AvrL567 ligands

scientific article

LOCALIZER: subcellular localization prediction of both plant and effector proteins in the plant cell.

scientific article published on 16 March 2017

Lipid binding activities of flax rust AvrM and AvrL567 effectors

scientific article

Loss of AvrSr50 by somatic exchange in stem rust leads to virulence for Sr50 resistance in wheat.

scientific article published in December 2017

Multiple functional self-association interfaces in plant TIR domains

scientific article

N-terminal motifs in some plant disease resistance proteins function in membrane attachment and contribute to disease resistance.

scientific article published in March 2012

NAD+ cleavage activity by animal and plant TIR domains in cell death pathways

scientific article published on 01 August 2019

New insights in plant immunity signaling activation.

scientific article published on 29 June 2011

Obligate biotrophy features unraveled by the genomic analysis of rust fungi

scientific article

Plant NLR Origins Traced Back to Green Algae

article

Plant science. Genome evolution in plant pathogens

scientific article

Positive selection in AvrP4 avirulence gene homologues across the genus Melampsora

article

Production of small cysteine-rich effector proteins in Escherichia coli for structural and functional studies

scientific article

Purification of the M flax-rust resistance protein expressed in Pichia pastoris

scientific article published on 25 April 2007

Rapid genetic change underpins antagonistic coevolution in a natural host-pathogen metapopulation

scientific article published on 28 February 2012

Recent progress in discovery and functional analysis of effector proteins of fungal and oomycete plant pathogens.

scientific article published on 18 June 2009

Recognition events and host-pathogen co-evolution in gene-for-gene resistance to flax rust.

scientific article published on January 2009

Regions outside of the leucine-rich repeats of flax rust resistance proteins play a role in specificity determination.

scientific article published in August 2000

Relationships between rust resistance genes at the M locus in flax.

scientific article published on January 2010

Showdown at the RXLR motif: Serious differences of opinion in how effector proteins from filamentous eukaryotic pathogens enter plant cells.

scientific article

Six Amino Acid Changes Confined to the Leucine-Rich Repeat beta-Strand/beta-Turn Motif Determine the Difference between the P and P2 Rust Resistance Specificities in Flax

scientific article published on 01 January 2001

Spatial variation in disease resistance: from molecules to metapopulations

scientific article published on January 2011

Starving the enemy

scientific article

Strategies for Wheat Stripe Rust Pathogenicity Identified by Transcriptome Sequencing

scientific article

Structural and Functional Analysis of a Plant Resistance Protein TIR Domain Reveals Interfaces for Self-Association, Signaling, and Autoregulation

scientific article

Structural and functional insights into the modulation of the activity of a flax cytokinin oxidase by flax rust effector AvrL567-A

scientific article published on 15 November 2018

Structural basis for assembly and function of a heterodimeric plant immune receptor

scientific article

Structures of the flax-rust effector AvrM reveal insights into the molecular basis of plant-cell entry and effector-triggered immunity

scientific article

Terrific protein traffic: the mystery of effector protein delivery by filamentous plant pathogens

scientific article

The AvrM effector from flax rust has a structured C-terminal domain and interacts directly with the M resistance protein

scientific article

The CC domain structure from the wheat stem rust resistance protein Sr33 challenges paradigms for dimerization in plant NLR proteins

scientific article published on 17 October 2016

The Melampsora lini AvrL567 avirulence genes are expressed in haustoria and their products are recognized inside plant cells

scientific article published on 18 February 2004

The Plant "Resistosome": Structural Insights into Immune Signaling

scientific article published on 01 August 2019

The gene Sr33, an ortholog of barley Mla genes, encodes resistance to wheat stem rust race Ug99.

scientific article

The generation of plant disease resistance gene specificities.

scientific article

The genome sequence and effector complement of the flax rust pathogen Melampsora lini

scientific article published on 24 March 2014

The ins and outs of rust haustoria

scientific article

The past, present and future of breeding rust resistant wheat

scientific article

The problem of how fungal and oomycete avirulence proteins enter plant cells

scientific article published on 9 January 2006

The role of effectors of biotrophic and hemibiotrophic fungi in infection.

scientific article published on 14 September 2011

The role of secreted proteins in diseases of plants caused by rust, powdery mildew and smut fungi.

scientific article published on 14 August 2007

The stem rust effector protein AvrSr50 escapes Sr50 recognition by a substitution in a single surface‐exposed residue

scientific article published in 2022

The use of Co2+for crystallization and structure determination, using a conventional monochromatic X-ray source, of flax rust avirulence protein

scientific article

The wheat Sr50 gene reveals rich diversity at a cereal disease resistance locus

scientific article published on 30 November 2015

Transformation of the flax rust fungus, Melampsora lini: selection via silencing of an avirulence gene

scientific article published on 26 October 2009

What Do We Know About NOD-Like Receptors in Plant Immunity?

scientific article

List of works by Peter N. Dodds

A Bacterial Type III Secretion Assay for Delivery of Fungal Effector Proteins into Wheat

A Near-Complete Haplotype-Phased Genome of the Dikaryotic Wheat Stripe Rust Fungus Puccinia striiformis f. sp. tritici Reveals High Interhaplotype Diversity.

A bacterial type III secretion-based delivery system for functional assays of fungal effectors in cereals.

A chromosome-level, fully phased genome assembly of the oat crown rust fungus <i>Puccinia coronata</i> f. sp. <i>avenae</i>: a resource to enable comparative genomics in the cereal rusts

A five-transgene cassette confers broad-spectrum resistance to a fungal rust pathogen in wheat

A near complete haplotype-phased genome of the dikaryotic wheat stripe rust fungus Puccinia striiformis f. sp. tritici reveals high inter-haplotype diversity

A novel conserved mechanism for plant NLR protein pairs: the "integrated decoy" hypothesis

A recently evolved hexose transporter variant confers resistance to multiple pathogens in wheat

A rust‐fungus Nudix hydrolase effector decaps <scp>mRNA</scp><i>in vitro</i> and interferes with plant immune pathways

Advances and challenges in computational prediction of effectors from plant pathogenic fungi

An autoactive mutant of the M flax rust resistance protein has a preference for binding ATP, whereas wild-type M protein binds ADP.

An overview of genetic rust resistance: From broad to specific mechanisms.

ApoplastP: prediction of effectors and plant proteins in the apoplast using machine learning.

Autoactive alleles of the flax L6 rust resistance gene induce non-race-specific rust resistance associated with the hypersensitive response

Avirulence proteins from haustoria-forming pathogens.

Challenges and progress towards understanding the role of effectors in plant-fungal interactions.

Changing the Game: Using Integrative Genomics to Probe Virulence Mechanisms of the Stem Rust Pathogen Puccinia graminis f. sp. tritici

Comparative Analysis of the Flax Immune Receptors L6 and L7 Suggests an Equilibrium-Based Switch Activation Model

Comparative genomics of Australian isolates of the wheat stem rust pathogen Puccinia graminis f. sp. tritici reveals extensive polymorphism in candidate effector genes

Computational Methods for Predicting Effectors in Rust Pathogens

Constructing haustorium-specific cDNA libraries from rust fungi.

Contrasting modes of evolution acting on the complex N locus for rust resistance in flax.

Co‐evolutionary interactions between host resistance and pathogen effector genes in flax rust disease ⬇️

Crystal Structures of Flax Rust Avirulence Proteins AvrL567-A and -D Reveal Details of the Structural Basis for Flax Disease Resistance Specificity

Crystal structure of the Melampsora lini effector AvrP reveals insights into a possible nuclear function and recognition by the flax disease resistance protein P.

Crystallization and X-ray diffraction analysis of the C-terminal domain of the flax rust effector protein AvrM.

Crystallization and preliminary X-ray diffraction analyses of the TIR domains of three TIR-NB-LRR proteins that are involved in disease resistance in Arabidopsis thaliana

Crystallization and preliminary X-ray diffraction analysis of the flax cytokinin oxidase LuCKX1.1.

Crystallization, X-ray diffraction analysis and preliminary structure determination of the TIR domain from the flax resistance protein L6.

Cytosolic activation of cell death and stem rust resistance by cereal MLA-family CC-NLR proteins.

Dancing with the Stars: An Asterid NLR Family

De Novo Assembly and Phasing of Dikaryotic Genomes from Two Isolates of Puccinia coronata f. sp. avenae, the Causal Agent of Oat Crown Rust.

De Novo Genome Assembly and Comparative Genomics of the Barley Leaf Rust Pathogen Puccinia hordei Identifies Candidates for Three Avirulence Genes

Direct protein interaction underlies gene-for-gene specificity and coevolution of the flax resistance genes and flax rust avirulence genes

Diversifying selection in the wheat stem rust fungus acts predominantly on pathogen-associated gene families and reveals candidate effectors

Diversity and evolution of effector loci in natural populations of the plant pathogen Melampsora lini.

EffectorP: predicting fungal effector proteins from secretomes using machine learning

Emergence of the Ug99 lineage of the wheat stem rust pathogen through somatic hybridisation

Epidemiological and Evolutionary Outcomes in Gene-for-Gene and Matching Allele Models.

Flax rust infection transcriptomics reveals a transcriptional profile that may be indicative for rust Avr genes

Flax rust resistance gene specificity is based on direct resistance-avirulence protein interactions.

Further analysis of gene-for-gene disease resistance specificity in flax

Genome analysis and avirulence gene cloning using a high-density RADseq linkage map of the flax rust fungus, Melampsora lini.

Genomic analysis of Xanthomonas translucens pathogenic on wheat and barley reveals cross-kingdom gene transfer events and diverse protein delivery systems

Genomics accelerated isolation of a new stem rust avirulence gene–wheat resistance gene pair

Haustorially expressed secreted proteins from flax rust are highly enriched for avirulence elicitors

Improved prediction of fungal effector proteins from secretomes with EffectorP 2.0.

In the trenches of plant pathogen recognition: Role of NB-LRR proteins.

Increased virulence of Puccinia coronata f. sp.avenae populations through allele frequency changes at multiple putative Avr loci

Induced proximity of a TIR signaling domain on a plant-mammalian NLR chimera activates defense in plants

Internalization of flax rust avirulence proteins into flax and tobacco cells can occur in the absence of the pathogen

Intramolecular interaction influences binding of the Flax L5 and L6 resistance proteins to their AvrL567 ligands

LOCALIZER: subcellular localization prediction of both plant and effector proteins in the plant cell.

Lipid binding activities of flax rust AvrM and AvrL567 effectors

Loss of AvrSr50 by somatic exchange in stem rust leads to virulence for Sr50 resistance in wheat.

Multiple functional self-association interfaces in plant TIR domains

N-terminal motifs in some plant disease resistance proteins function in membrane attachment and contribute to disease resistance.

NAD+ cleavage activity by animal and plant TIR domains in cell death pathways

New insights in plant immunity signaling activation.

Obligate biotrophy features unraveled by the genomic analysis of rust fungi

Plant NLR Origins Traced Back to Green Algae

Plant science. Genome evolution in plant pathogens

Positive selection in AvrP4 avirulence gene homologues across the genus Melampsora

Production of small cysteine-rich effector proteins in Escherichia coli for structural and functional studies

Purification of the M flax-rust resistance protein expressed in Pichia pastoris

Rapid genetic change underpins antagonistic coevolution in a natural host-pathogen metapopulation

Recent progress in discovery and functional analysis of effector proteins of fungal and oomycete plant pathogens.

Recognition events and host-pathogen co-evolution in gene-for-gene resistance to flax rust.

Regions outside of the leucine-rich repeats of flax rust resistance proteins play a role in specificity determination.

Relationships between rust resistance genes at the M locus in flax.

Showdown at the RXLR motif: Serious differences of opinion in how effector proteins from filamentous eukaryotic pathogens enter plant cells.

Six Amino Acid Changes Confined to the Leucine-Rich Repeat beta-Strand/beta-Turn Motif Determine the Difference between the P and P2 Rust Resistance Specificities in Flax

Spatial variation in disease resistance: from molecules to metapopulations

Starving the enemy

Strategies for Wheat Stripe Rust Pathogenicity Identified by Transcriptome Sequencing

Structural and Functional Analysis of a Plant Resistance Protein TIR Domain Reveals Interfaces for Self-Association, Signaling, and Autoregulation

Structural and functional insights into the modulation of the activity of a flax cytokinin oxidase by flax rust effector AvrL567-A

Structural basis for assembly and function of a heterodimeric plant immune receptor

Structures of the flax-rust effector AvrM reveal insights into the molecular basis of plant-cell entry and effector-triggered immunity