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List of works by Guoliang Li

3D chromosome modeling with semi-definite programming and Hi-C data

scientific article

A Comprehensive Characterization of the Function of LincRNAs in Transcriptional Regulation Through Long-Range Chromatin Interactions

scientific article

ASMdb: a comprehensive database for allele-specific DNA methylation in diverse organisms

scientific article published on 01 January 2022

An AR-ERG transcriptional signature defined by long-range chromatin interactomes in prostate cancer cells

scientific article published on 03 January 2019

An integrated package for bisulfite DNA methylation data analysis with Indel-sensitive mapping

scientific article published on 22 January 2019

Analysis of Chromatin Regulators Reveals Specific Features of Rice DNA Methylation Pathways

scientific article published on 12 May 2016

Analyzing the fitch method for reconstructing ancestral states on ultrametric phylogenetic trees

scientific article published on 20 January 2010

BatMeth: improved mapper for bisulfite sequencing reads on DNA methylation

scientific article

CTCF-Mediated Human 3D Genome Architecture Reveals Chromatin Topology for Transcription.

scientific article

CTCF-mediated functional chromatin interactome in pluripotent cells

scientific article

Cellular reprogramming by the conjoint action of ERα, FOXA1, and GATA3 to a ligand-inducible growth state.

scientific article

ChIA-PET analysis of transcriptional chromatin interactions.

scientific article

ChIA-PET tool for comprehensive chromatin interaction analysis with paired-end tag sequencing

scientific article

Chromatin Interaction Analysis with Paired-End Tag (ChIA-PET) sequencing technology and application

scientific article

Chromatin Interaction Analysis with Updated ChIA-PET Tool (V3)

scientific article published on 22 July 2019

Chromatin connectivity maps reveal dynamic promoter-enhancer long-range associations

scientific article

Chromatin interaction maps reveal genetic regulation for quantitative traits in maize.

scientific article

Chromatin interaction networks and higher order architectures of eukaryotic genomes

scientific article published on September 2011

Chromatin loops associated with active genes and heterochromatin shape rice genome architecture for transcriptional regulation

scientific article published on 13 August 2019

Computer methods of analysis of chromosome contacts in the cell nucleus based on sequencing technology data

scientific article published in October 2017

Cooperation between the H3K27me3 Chromatin Mark and Non-CG Methylation in Epigenetic Regulation.

scientific article

Coordinated demethylation of H3K9 and H3K27 is required for rapid inflammatory responses of endothelial cells

scientific article published on 03 March 2020

Cross-enhancement of ANGPTL4 transcription by HIF1 alpha and PPAR beta/delta is the result of the conformational proximity of two response elements

scientific article published on 10 April 2014

DNase I-hypersensitive exons colocalize with promoters and distal regulatory elements

scientific article

Digestion-ligation-only Hi-C is an efficient and cost-effective method for chromosome conformation capture

scientific article published on 26 April 2018

Direct evidence for pitavastatin induced chromatin structure change in the KLF4 gene in endothelial cells

scientific article

Dissecting the chromatin interactome of microRNA genes.

scientific article published on 18 December 2013

Evolutionary dynamics of 3D genome architecture following polyploidization in cotton.

scientific article

Extensive Promoter-Centered Chromatin Interactions Provide a Topological Basis for Transcription Regulation ⬇️

scientific article (publication date: 20 January 2012)

Feedback Regulation of ABA Signaling and Biosynthesis by a bZIP Transcription Factor Targets Drought-Resistance-Related Genes.

scientific article published on 20 June 2016

Genetic variation of ESR1 and its co-activator PPARGC1B is synergistic in augmenting the risk of estrogen receptor-positive breast cancer ⬇️

scientific article

Glucocorticoid receptor and nuclear factor kappa-b affect three-dimensional chromatin organization

scientific article

Greedy selection of species for ancestral state reconstruction on phylogenies: elimination is better than insertion

scientific article

Identification of MyoD-Responsive Transcripts Reveals a Novel Long Non-coding RNA (lncRNA-AK143003) that Negatively Regulates Myoblast Differentiation

scientific article

Immune genes are primed for robust transcription by proximal long noncoding RNAs located in nuclear compartments

scientific article published on 10 December 2018

In silico identification of enhancers on the basis of a combination of transcription factor binding motif occurrences

scientific article published on September 2016

Integrative analysis of reference epigenomes in 20 rice varieties

scientific article published on 27 May 2020

Integrative model of genomic factors for determining binding site selection by estrogen receptor-α

scientific article published on December 2010

Interactome maps of mouse gene regulatory domains reveal basic principles of transcriptional regulation.

scientific article published on December 2013

Large-scale functional organization of long-range chromatin interaction networks

scientific article

Long noncoding RNA regulates myogenesis by interacting with polycomb repressive complex 2

article published in the Proceedings of the National Academy of Sciences of the United States of America

Long span DNA paired-end-tag (DNA-PET) sequencing strategy for the interrogation of genomic structural mutations and fusion-point-guided reconstruction of amplicons.

scientific article

MethHaplo: combining allele-specific DNA methylation and SNPs for haplotype region identification

scientific article published on 12 October 2020

NODULES WITH ACTIVATED DEFENSE 1 is required for maintenance of rhizobial endosymbiosis in Medicago truncatula.

scientific article published on June 2016

Next-generation sequencing of apoptotic DNA breakpoints reveals association with actively transcribed genes and gene translocations

scientific article

Publisher Correction: Immune genes are primed for robust transcription by proximal long noncoding RNAs located in nuclear compartments

scientific article published on 01 February 2019

Recurrent Fusion Genes in Gastric Cancer: CLDN18-ARHGAP26 Induces Loss of Epithelial Integrity

scientific article

Reference genome sequences of two cultivated allotetraploid cottons, Gossypium hirsutum and Gossypium barbadense

scientific article published on 03 December 2018

Silver nanoparticles impair zebrafish skeletal and cardiac myofibrillogenesis and sarcomere formation

scientific article published in July 2018

Statistical models for detecting differential chromatin interactions mediated by a protein.

scientific article

TNFα signals through specialized factories where responsive coding and miRNA genes are transcribed

scientific article

The DLO Hi-C Tool for Digestion-Ligation-Only Hi-C Chromosome Conformation Capture Data Analysis

scientific article published on 10 March 2020

The Epstein-Barr Virus Regulome in Lymphoblastoid Cells.

scientific article published on October 2017

The effects of Arabidopsis genome duplication on the chromatin organization and transcriptional regulation

scientific article published on 01 September 2019

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