List of works - Nicolas Bertin

A map of the interactome network of the metazoan C. elegans

scientific article (publication date: 23 January 2004)

A promoter-level mammalian expression atlas

scientific article

A resource of ribosomal RNA-depleted RNA-Seq data from different normal adult and fetal human tissues

scientific article

An Atlas of Combinatorial Transcriptional Regulation in Mouse and Man

An atlas of active enhancers across human cell types and tissues

scientific article

An atlas of combinatorial transcriptional regulation in mouse and man

scientific article

An atlas of human long non-coding RNAs with accurate 5' ends.

scientific article

An integrated expression atlas of miRNAs and their promoters in human and mouse.

scientific article

Annotation transfer between genomes: protein-protein interologs and protein-DNA regulogs

scientific article

Bubble-based acoustic micropropulsors: active surfaces and mixers.

scientific article published on 4 April 2017

C. elegans ORFeome version 1.1: experimental verification of the genome annotation and resource for proteome-scale protein expression.

scientific article

CAGE-defined promoter regions of the genes implicated in Rett Syndrome.

scientific article published on 24 December 2014

Confirmation of organized modularity in the yeast interactome

scientific article

Deep transcriptome profiling of mammalian stem cells supports a regulatory role for retrotransposons in pluripotency maintenance

scientific article

Definition of Promotome-Transcriptome Architecture Using CAGEscan

Development of a high-throughput method for the systematic identification of human proteins nuclear translocation potential

scientific article

Digital expression profiling of the compartmentalized translatome of Purkinje neurons

scientific article

Effect of sampling on topology predictions of protein-protein interaction networks

Empirically controlled mapping of the Caenorhabditis elegans protein-protein interactome network

scientific article

Erratum: Evidence for dynamically organized modularity in the yeast protein–protein interaction network

scientific article published in Nature

Forward and Reverse Proteomics

Functional genomic analysis of RNA interference in C. elegans

scientific article (publication date: 20 May 2005)

Gateways to the FANTOM5 promoter level mammalian expression atlas

scientific article

Generation of the Brucella melitensis ORFeome version 1.1.

scientific article

Genome-scale analysis of in vivo spatiotemporal promoter activity in Caenorhabditis elegans.

scientific article published on 7 May 2007

Human ORFeome version 1.1: a platform for reverse proteomics

scientific article

Integrating interactome, phenome, and transcriptome mapping data for the C. elegans germline

scientific article

Interactive visualization and analysis of large-scale sequencing datasets using ZENBU.

scientific article published in March 2014

Large-Scale Whole-Genome Sequencing of Three Diverse Asian Populations in Singapore

scientific article published on 1 October 2019

Linking FANTOM5 CAGE Peaks To Annotations With CAGEscan

Linking FANTOM5 CAGE peaks to annotations with CAGEscan

scientific article published on 3 October 2017

Linking promoters to functional transcripts in small samples with nanoCAGE and CAGEscan

scientific article

NanoCAGE analysis of the mouse olfactory epithelium identifies the expression of vomeronasal receptors and of proximal LINE elements

scientific article

Network modeling links breast cancer susceptibility and centrosome dysfunction

scientific article

Predictive models of molecular machines involved in Caenorhabditis elegans early embryogenesis

scientific article published in August 2005

Promoter architecture of mouse olfactory receptor genes

scientific journal article

Propulsion of Bubble-Based Acoustic Microswimmers

scientific article published on 29 December 2015

Reply to Toward the complete interactome

Super-Enhancers and Broad H3K4me3 Domains Form Complex Gene Regulatory Circuits Involving Chromatin Interactions.

scientific article

Systematic interactome mapping and genetic perturbation analysis of a C. elegans TGF-beta signaling network

scientific article published on February 2004

The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line.

scientific article

Transcribed enhancers lead waves of coordinated transcription in transitioning mammalian cells

scientific article

Transcriptional profiling of the human fibrillin/LTBP gene family, key regulators of mesenchymal cell functions.

scientific article

Unamplified cap analysis of gene expression on a single-molecule sequencer.

scientific article

Unexpected expression of alpha- and beta-globin in mesencephalic dopaminergic neurons and glial cells

scientific article

List of works by Nicolas Bertin

A map of the interactome network of the metazoan C. elegans

A promoter-level mammalian expression atlas

A resource of ribosomal RNA-depleted RNA-Seq data from different normal adult and fetal human tissues

An Atlas of Combinatorial Transcriptional Regulation in Mouse and Man

An atlas of active enhancers across human cell types and tissues

An atlas of combinatorial transcriptional regulation in mouse and man

An atlas of human long non-coding RNAs with accurate 5' ends.

An integrated expression atlas of miRNAs and their promoters in human and mouse.

Annotation transfer between genomes: protein-protein interologs and protein-DNA regulogs

Bubble-based acoustic micropropulsors: active surfaces and mixers.

C. elegans ORFeome version 1.1: experimental verification of the genome annotation and resource for proteome-scale protein expression.

CAGE-defined promoter regions of the genes implicated in Rett Syndrome.

Confirmation of organized modularity in the yeast interactome

Deep transcriptome profiling of mammalian stem cells supports a regulatory role for retrotransposons in pluripotency maintenance

Definition of Promotome-Transcriptome Architecture Using CAGEscan

Development of a high-throughput method for the systematic identification of human proteins nuclear translocation potential

Digital expression profiling of the compartmentalized translatome of Purkinje neurons

Effect of sampling on topology predictions of protein-protein interaction networks

Empirically controlled mapping of the Caenorhabditis elegans protein-protein interactome network

Erratum: Evidence for dynamically organized modularity in the yeast protein–protein interaction network

Forward and Reverse Proteomics

Functional genomic analysis of RNA interference in C. elegans

Gateways to the FANTOM5 promoter level mammalian expression atlas

Generation of the Brucella melitensis ORFeome version 1.1.

Genome-scale analysis of in vivo spatiotemporal promoter activity in Caenorhabditis elegans.

Human ORFeome version 1.1: a platform for reverse proteomics

Integrating interactome, phenome, and transcriptome mapping data for the C. elegans germline

Interactive visualization and analysis of large-scale sequencing datasets using ZENBU.

Large-Scale Whole-Genome Sequencing of Three Diverse Asian Populations in Singapore

Linking FANTOM5 CAGE Peaks To Annotations With CAGEscan

Linking FANTOM5 CAGE peaks to annotations with CAGEscan

Linking promoters to functional transcripts in small samples with nanoCAGE and CAGEscan

NanoCAGE analysis of the mouse olfactory epithelium identifies the expression of vomeronasal receptors and of proximal LINE elements

Network modeling links breast cancer susceptibility and centrosome dysfunction

Predictive models of molecular machines involved in Caenorhabditis elegans early embryogenesis

Promoter architecture of mouse olfactory receptor genes

Propulsion of Bubble-Based Acoustic Microswimmers

Reply to Toward the complete interactome

Super-Enhancers and Broad H3K4me3 Domains Form Complex Gene Regulatory Circuits Involving Chromatin Interactions.

Systematic interactome mapping and genetic perturbation analysis of a C. elegans TGF-beta signaling network

The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line.

Transcribed enhancers lead waves of coordinated transcription in transitioning mammalian cells

Transcriptional profiling of the human fibrillin/LTBP gene family, key regulators of mesenchymal cell functions.

Unamplified cap analysis of gene expression on a single-molecule sequencer.

Unexpected expression of alpha- and beta-globin in mesencephalic dopaminergic neurons and glial cells

Using CAGE Data for Quantitative Expression