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List of works by Huldrych F Günthard

2010 Guidelines for Antiretroviral Treatment of HIV From the International AIDS Society–USA Panel—Reply

scientific article published in The Journal of the American Medical Association

2011 update of the drug resistance mutations in HIV-1 ⬇️

scientific article published on November 1, 2011

2014 Update of the drug resistance mutations in HIV-1

scientific article

2015 Update of the Drug Resistance Mutations in HIV-1.

scientific article published on October 2015

2017 Update of the Drug Resistance Mutations in HIV-1.

scientific article published on December 2017

2019 update of the drug resistance mutations in HIV-1

scientific article published on 01 September 2019

24 hours in the life of HIV-1 in a T cell line

scientific article

A Bayesian network approach to study host and viral genetic correlates of HIV-1 disease progression.

scientific article published on 3 October 2011

A Comprehensive Analysis of Primer IDs to Study Heterogeneous HIV-1 Populations

scientific article published on 19 December 2015

A Direct Comparison of Two Densely Sampled HIV Epidemics: The UK and Switzerland

scientific article published on 19 September 2016

A LC-tandem MS assay for the simultaneous measurement of new antiretroviral agents: Raltegravir, maraviroc, darunavir, and etravirine.

scientific article

A Systematic Phylogenetic Approach to Study the Interaction of HIV-1 With Coinfections, Noncommunicable Diseases, and Opportunistic Diseases

scientific article published on 01 June 2019

A comparison of initial antiretroviral therapy in the Swiss HIV Cohort Study and the recommendations of the International AIDS Society-USA.

scientific article

A controlled trial of granulocyte macrophage-colony stimulating factor during interruption of HAART.

scientific article published on July 2003

A framework for inferring fitness landscapes of patient-derived viruses using quasispecies theory

scientific article

A genome-to-genome analysis of associations between human genetic variation, HIV-1 sequence diversity, and viral control

scientific article published on 29 October 2013

A longitudinal analysis of healthcare costs after treatment optimization following genotypic antiretroviral resistance testing: does resistance testing pay off?

article

A novel Acute Retroviral Syndrome Severity Score predicts the key surrogate markers for HIV-1 disease progression

scientific article

A prospective trial of structured treatment interruptions in human immunodeficiency virus infection

scientific article published in May 2003

A randomized trial of simplified maintenance therapy with abacavir, lamivudine, and zidovudine in human immunodeficiency virus infection

scientific article

A rare but severe pulmonary side effect of cetuximab in two patients.

scientific article published on 25 July 2012

Acute Cytomegalovirus Colitis Presenting during Primary HIV Infection: an Unusual Case of an Immune Reconstitution Inflammatory Syndrom

article

Additive effects of HLA alleles and innate immune genes determine viral outcome in HCV infection

scientific article published on 4 July 2014

Adherence as a predictor of the development of class-specific resistance mutations: the Swiss HIV Cohort Study

scientific article (publication date: 2013)

Adverse events of raltegravir and dolutegravir

scientific article published on 7 July 2017

African descent is associated with slower CD4 cell count decline in treatment-naive patients of the Swiss HIV Cohort Study

scientific article published in June 2009

Ambiguous nucleotide calls from population-based sequencing of HIV-1 are a marker for viral diversity and the age of infection

scientific article published on 10 January 2011

Analysis of restriction fragment length polymorphism and ribotyping of multiresistant Stenotrophomonas maltophilia isolated from persisting lung infection in a cystic fibrosis patient

scientific article published in January 1995

Antibacterial effects of antiretrovirals, potential implications for microbiome studies in HIV.

scientific article published on 12 May 2017

Antibodies against HPV16E6 oncoprotein in the Swiss HIV cohort study: Kinetics and anal cancer risk prediction

scientific article published on 12 November 2019

Antibody responses in primary HIV-1 infection.

scientific article published on January 2008

Antiretroviral Drugs for Treatment and Prevention of HIV Infection in Adults: 2016 Recommendations of the International Antiviral Society-USA Panel

scientific article published on July 2016

Antiretroviral Treatment and Osteonecrosis in Patients of the Swiss HIV Cohort Study: A Nested Case-Control Study

article

Antiretroviral drug resistance testing in adult HIV-1 infection: 2008 recommendations of an International AIDS Society-USA panel

scientific article published on July 2008

Antiretroviral drug resistance testing in adult HIV-1 infection: 2008 recommendations of an International AIDS Society-USA panel.

scientific article published on August 2008

Antiretroviral resistance during successful therapy of HIV type 1 infection.

scientific article

Antiretroviral therapy

scientific article

Antiretroviral treatment and osteonecrosis in patients of the Swiss HIV Cohort Study: a nested case-control study

scientific article published in September 2004

Antiretroviral treatment of adult HIV infection: 2010 recommendations of the International AIDS Society-USA panel

scientific article published on July 2010

Antiretroviral treatment of adult HIV infection: 2012 recommendations of the International Antiviral Society-USA panel.

scientific article

Antiretroviral treatment of adult HIV infection: 2014 recommendations of the International Antiviral Society-USA Panel.

scientific article published on July 2014

Aortic homograft endocarditis caused by Cardiobacterium hominis and complicated by agranulocytosis due to ceftriaxone

scientific article published on 26 November 2010

Assessing efficacy of different nucleos(t)ide backbones in NNRTI-containing regimens in the Swiss HIV Cohort Study

scientific article published on 11 September 2015

Assessing predicted HIV-1 replicative capacity in a clinical setting

scientific article published in November 2011

Assessing the Paradox Between Transmitted and Acquired HIV Type 1 Drug Resistance Mutations in the Swiss HIV Cohort Study From 1998 to 2012.

scientific article published on 9 January 2015

Assessing the danger of self-sustained HIV epidemics in heterosexuals by population based phylogenetic cluster analysis

scientific article published on 12 September 2017

Assessment of Overlap of Phylogenetic Transmission Clusters and Communities in Simple Sexual Contact Networks: Applications to HIV-1.

scientific article published on 10 February 2016

Association between specific HIV-1 Env traits and virologic control in vivo

scientific article published on 11 June 2009

Association of pharmacogenetic markers with premature discontinuation of first-line anti-HIV therapy: an observational cohort study

scientific article

Attenuated and nonproductive viral transcription in the lymphatic tissue of HIV-1-infected patients receiving potent antiretroviral therapy

scientific article

Baseline Genotype Testing to Assess Drug Resistance Before Beginning HIV Treatment-Reply

scientific article published on 01 November 2018

Biphasic decay kinetics suggest progressive slowing in turnover of latently HIV-1 infected cells during antiretroviral therapy

scientific article

Biphasic decline of CD4 cell count during scheduled treatment interruptions

CD161 Defines a Functionally Distinct Subset of Pro-Inflammatory Natural Killer Cells

scientific article published on 9 April 2018

CD4/CD8 ratio and CD8 counts predict CD4 response in HIV-1-infected drug naive and in patients on cART.

scientific article published on October 2016

CD8+ T cells are activated in an antigen-independent manner in HIV-infected individuals

scientific article published on 20 January 2014

CME

Can Directionality of HIV Transmission be Predicted by Next-Generation Sequencing Data?

scientific article published on 01 September 2019

Cell-cell transmission enables HIV-1 to evade inhibition by potent CD4bs directed antibodies

scientific article

Cellular Viral Rebound after Cessation of Potent Antiretroviral Therapy Predicted by Levels of Multiply Spliced HIV‐1 RNA Encodingnef

article

Cellular immune responses to HCV core increase and HCV RNA levels decrease during successful antiretroviral therapy

scientific article published on 26 July 2010

Challenges and opportunities in estimating viral genetic diversity from next-generation sequencing data

scientific article (publication date: 2012)

Changes in biomarkers of liver disease during successful combination antiretroviral therapy in HIV-HCV-coinfected individuals

scientific article

Characterization of human immunodeficiency virus type 1 (HIV-1) diversity and tropism in 145 patients with primary HIV-1 infection

scientific article published on 12 October 2011

Clinical outcomes of two-drug regimens vs. three-drug regimens in antiretroviral treatment-experienced people living with HIV

scientific article published on 23 December 2020

Clinical validation of atazanavir/ritonavir genotypic resistance score in protease inhibitor-experienced patients

scientific article published in January 2006

Cluster of Leptospirosis Acquired Through River Surfing in Switzerland

scientific article

Clustering of HCV coinfections on HIV phylogeny indicates domestic and sexual transmission of HCV.

scientific article published on 22 January 2014

Clusters of Sexual Behavior in Human Immunodeficiency Virus-positive Men Who Have Sex With Men Reveal Highly Dissimilar Time Trends

scientific article published on 01 January 2020

Cohort profile: the Swiss HIV Cohort study

scientific article published on 30 November 2009

Common genetic variation and the control of HIV-1 in humans

scientific article published in December 2009

Comparative effectiveness of initial antiretroviral therapy regimens: ACTG 5095 and 5142 clinical trials relative to ART-CC cohort study

scientific article

Comparative performance of high-density oligonucleotide sequencing and dideoxynucleotide sequencing of HIV type 1 pol from clinical samples.

scientific article published in July 1998

Comparative transcriptomics of extreme phenotypes of human HIV-1 infection and SIV infection in sooty mangabey and rhesus macaque

scientific article

Comparing mutational pathways to lopinavir resistance in HIV-1 subtypes B versus C

scientific article published on 07 September 2021

Complement lysis activity in autologous plasma is associated with lower viral loads during the acute phase of HIV-1 infection

scientific article (publication date: November 2006)

Contribution of genetic background, traditional risk factors, and HIV-related factors to coronary artery disease events in HIV-positive persons

scientific article published on 26 March 2013

Correction: 24 Hours in the Life of HIV-1 in a T Cell Line

scientific article published on 15 June 2015

Correction: Long-Lasting Protection of Activity of Nucleoside Reverse Transcriptase Inhibitors and Protease Inhibitors (PIs) by Boosted PI Containing Regimens

scientific article (publication date: 25 July 2013)

Correction: Viral genetic variation accounts for a third of variability in HIV-1 set-point viral load in Europe

scientific article published on 13 July 2017

Cost-effectiveness of genotypic antiretroviral resistance testing in HIV-infected patients with treatment failure

scientific article

Delay of HIV-1 rebound after cessation of antiretroviral therapy through passive transfer of human neutralizing antibodies

article

Delineating CD4 dependency of HIV-1: Adaptation to infect low level CD4 expressing target cells widens cellular tropism but severely impacts on envelope functionality.

scientific article

Determinants of HIV-1 broadly neutralizing antibody induction.

scientific article

Determinants of HIV-1 reservoir size and long-term dynamics during suppressive ART

scientific article published on 19 July 2019

Determinants of sustained viral suppression in HIV-infected patients with self-reported poor adherence to antiretroviral therapy

scientific article

Development of a high-throughput bead based assay system to measure HIV-1 specific immune signatures in clinical samples

scientific article published on 22 December 2017

Diagnosis of latent tuberculosis infection is associated with reduced HIV viral load and lower risk for opportunistic infections in people living with HIV

scientific article published on 07 December 2020

Diagnostic performance of line-immunoassay based algorithms for incident HIV-1 infection

scientific article

Differences in HIV burden and immune activation within the gut of HIV-positive patients receiving suppressive antiretroviral therapy

scientific article

Direct ex vivo analysis reveals distinct phenotypic patterns of HIV-specific CD8(+) T lymphocyte activation in response to therapeutic manipulation of virus load

scientific article published in April 2001

Disentangling human tolerance and resistance against HIV.

scientific article

Dissecting HIV Virulence: Heritability of Setpoint Viral Load, CD4+ T-Cell Decline, and Per-Parasite Pathogenicity

scientific article published in January 2018

Distinct conformations of the HIV-1 V3 loop crown are targetable for broad neutralization

scientific article published on 18 November 2021

Distinct, IgG1-driven antibody response landscapes demarcate individuals with broadly HIV-1 neutralizing activity

scientific article published on 24 May 2018

Divergent adaptation of hepatitis C virus genotypes 1 and 3 to human leukocyte antigen-restricted immune pressure

scientific article

Divergent effects of cell environment on HIV entry inhibitor activity.

scientific article

Does short-term virologic failure translate to clinical events in antiretroviral-naïve patients initiating antiretroviral therapy in clinical practice?

scientific article

Don't miss the primary HIV-infection

scientific article published on August 2014

Drug resistance mutations during structured treatment interruptions

scientific article published in October 2003

Dually Active HIV/HBV Antiretrovirals as Protection Against Incident Hepatitis B Infections: Potential for Prophylaxis

scientific article

Dynamics of total, linear nonintegrated, and integrated HIV-1 DNA in vivo and in vitro

scientific article

Early and nonreversible decrease of CD161++ /MAIT cells in HIV infection

scientific article published on 18 December 2012

Early antiretroviral therapy during primary HIV-1 infection results in a transient reduction of the viral setpoint upon treatment interruption

scientific article (publication date: 2011)

Easy and Accurate Reconstruction of Whole HIV Genomes from Short-Read Sequence Data

article

Easy and accurate reconstruction of whole HIV genomes from short-read sequence data with shiver.

scientific article published in January 2018

Editorial Commentary: The Irreversibility of HIV Drug Resistance

scientific article published on 19 May 2015

Efavirenz intoxication due to a new CYP2B6 constellation.

scientific article published on 2 May 2013

Efavirenz intoxication due to slow hepatic metabolism

scientific article published on 7 January 2005

Effect of early antiretroviral therapy during primary HIV-1 infection on cell-associated HIV-1 DNA and plasma HIV-1 RNA.

scientific article published in January 2011

Effect of immediate initiation of antiretroviral treatment on the risk of acquired HIV drug resistance

scientific article published on 10 November 2017

Effect of individual cognitive behaviour intervention on adherence to antiretroviral therapy: prospective randomized trial.

scientific article

Effect of influenza vaccination on viral replication and immune response in persons infected with human immunodeficiency virus receiving potent antiretroviral therapy

scientific article published on February 2000

Effect of raltegravir-containing intensification on HIV burden and T-cell activation in multiple gut sites of HIV-positive adults on suppressive antiretroviral therapy

scientific article

Effect of transmitted drug resistance on virological and immunological response to initial combination antiretroviral therapy for HIV (EuroCoord-CHAIN joint project): a European multicohort study

scientific article published on 25 February 2011

Effect of treatment, during primary infection, on establishment and clearance of cellular reservoirs of HIV-1.

scientific article

Effects of HIV type-1 immune selection on susceptability to integrase inhibitor resistance

scientific article

Effects of alpha interferon treatment on intrinsic anti-HIV-1 immunity in vivo

scientific article published on 23 October 2013

Efficacy and safety of dolutegravir plus emtricitabine versus standard ART for the maintenance of HIV-1 suppression: 48-week results of the factorial, randomized, non-inferiority SIMPL'HIV trial

scientific article published on 10 November 2020

Efficacy of etravirine combined with darunavir or other ritonavir-boosted protease inhibitors in HIV-1-infected patients: an observational study using pooled European cohort data

scientific article published on 14 January 2015

Efficient suppression of minority drug-resistant HIV type 1 (HIV-1) variants present at primary HIV-1 infection by ritonavir-boosted protease inhibitor-containing antiretroviral therapy

scientific article published in April 2010

Emergence of Acquired HIV-1 Drug Resistance Almost Stopped in Switzerland: A 15-Year Prospective Cohort Analysis

scientific article published on 8 March 2016

Emergence of HIV-1 drug resistance in previously untreated patients initiating combination antiretroviral treatment: a comparison of different regimen types

scientific article published on September 2007

Emergence of minor populations of human immunodeficiency virus type 1 carrying the M184V and L90M mutations in subjects undergoing structured treatment interruptions

scientific article published on 3 November 2003

Entry and transcription as key determinants of differences in CD4 T-cell permissiveness to human immunodeficiency virus type 1 infection.

scientific article published on October 2004

Epidemiological and biological evidence for a compensatory effect of connection domain mutation N348I on M184V in HIV-1 reverse transcriptase

scientific article

Equal amounts of intracellular and virion-enclosed hepatitis C virus RNA are associated with peripheral-blood mononuclear cells in vivo

scientific article published on 13 November 2006

Estimating the basic reproductive number from viral sequence data.

scientific article

Estimating the dynamics and dependencies of accumulating mutations with applications to HIV drug resistance

scientific article published on 14 May 2015

Estimating the net contribution of interleukin-28B variation to spontaneous hepatitis C virus clearance

scientific article

Evaluation of the Predictive Potential of the Short Acute Retroviral Syndrome Severity Score for HIV-1 Disease Progression in Individuals With Acute HIV Infection

scientific article published on April 2017

Evidence for positive selection driving the evolution of HIV-1 env under potent antiviral therapy

scientific article published in June 2001

Factors associated with syphilis incidence in the HIV-infected in the era of highly active antiretrovirals

scientific article published on January 2017

Factors associated with the emergence of K65R in patients with HIV-1 infection treated with combination antiretroviral therapy containing tenofovir

scientific article published in April 2008

Failure to detect xenotropic murine leukemia virus-related virus in blood of individuals at high risk of blood-borne viral infections

scientific article

Frequency and Spectrum of Unexpected Clinical Manifestations of Primary HIV-1 Infection

scientific article published on 19 May 2015

Full-length haplotype reconstruction to infer the structure of heterogeneous virus populations

scientific article

Functional discrepancies in HIV-specific CD8+ T-lymphocyte populations are related to plasma virus load

scientific article published in November 2002

Genetic attributes of cerebrospinal fluid-derived HIV-1 env.

scientific article

Genetic composition of human immunodeficiency virus type 1 in cerebrospinal fluid and blood without treatment and during failing antiretroviral therapy.

scientific article

Genetic variation in IL28B is associated with chronic hepatitis C and treatment failure: a genome-wide association study

scientific article

Genome-wide mRNA expression correlates of viral control in CD4+ T-cells from HIV-1-infected individuals

scientific article

Genotypic Resistance Tests Sequences Reveal the Role of Marginalized Populations in HIV-1 Transmission in Switzerland

scientific article published on 14 June 2016

Gilbert syndrome and the development of antiretroviral therapy-associated hyperbilirubinemia

scientific article published on 9 September 2005

Glancing behind virus load variation in HIV-1 infection

scientific article published on November 2003

Gut commensal microbes do not represent a dominant antigenic source for continuous CD4+ T-cell activation during HIV-1 infection

scientific article published on 8 September 2015

HCV Genetic Diversity Can Be Used to Infer Infection Recency and Time since Infection

scientific article published on 31 October 2020

HIV RNA in plasma rebounds within days during structured treatment interruptions

scientific article published in January 2003

HIV Transmission Chains Exhibit Greater HLA-B Homogeneity Than Randomly Expected

scientific article published on 01 August 2019

HIV infection and antiretroviral therapy: basic principles of treatment and impacts on other therapies

scientific article published in January 2013

HIV infection today

scientific article

HIV patients developing primary CNS lymphoma lack EBV-specific CD4+ T cell function irrespective of absolute CD4+ T cell counts

scientific article published in March 2007

HIV rebounds from latently infected cells, rather than from continuing low-level replication

scholarly article

HIV replication elicits little cytopathic effects in vivo: analysis of surrogate markers for virus production, cytotoxic T cell response and infected cell death

scientific article published in September 2006

HIV sensitivity to neutralization is determined by target and virus producer cell properties

scientific article

HIV-1 Drug Resistance Among Ugandan Adults Attending an Urban Out-Patient Clinic

article

HIV-1 RNAs are Not Part of the Argonaute 2 Associated RNA Interference Pathway in Macrophages

scientific article published on 30 July 2015

HIV-1 Subtype C, Tenofovir, and the Relationship With Treatment Failure and Drug Resistance

scientific article published on 24 May 2016

HIV-1 Transmission During Recent Infection and During Treatment Interruptions as Major Drivers of New Infections in the Swiss HIV Cohort Study

scientific article published on 19 September 2015

HIV-1 p24 May Persist During Long-Term Highly Active Antiretroviral Therapy, Increases Little During Short Treatment Breaks, and Its Rebound After Treatment Stop Correlates With CD4+ T Cell Loss

article

HIV-1 p24 antigen is a significant inverse correlate of CD4 T-cell change in patients with suppressed viremia under long-term antiretroviral therapy

scientific article published in July 2003

HIV-1 replication activates CD4+ T cells with specificities for persistent herpes viruses

scientific article

HIV-1 reverse transcriptase connection domain mutations: dynamics of emergence and implications for success of combination antiretroviral therapy

scientific article published on September 2010

HIV-1 superinfection in an HIV-2-infected woman with subsequent control of HIV-1 plasma viremia

scientific article published in June 2009

HIV-1 transmission after cessation of early antiretroviral therapy among men having sex with men.

scientific article published in May 2010

HLA-Bw4 homozygosity is associated with an impaired CD4 T cell recovery after initiation of antiretroviral therapy

scientific article published in June 2008

HLA-Bw4 identifies a population of HIV-infected patients with an increased capacity to control viral replication after structured treatment interruption

scientific article published on 15 April 2012

Hemophagocytic syndrome caused by primary herpes simplex virus 1 infection: report of a first case.

scientific article published on 3 July 2010

Hepatitis C Virus Infections in the Swiss HIV Cohort Study: A Rapidly Evolving Epidemic ⬇️

scientific article published on August 14, 2012

Hepatitis C virus drug resistance and immune-driven adaptations: relevance to new antiviral therapy

scientific article

Hepatitis delta-associated mortality in HIV/HBV-coinfected patients

scientific article

Heritability of the HIV-1 reservoir size and decay under long-term suppressive ART

scientific article published on 02 November 2020

Heterogeneous clearance rates of long-lived lymphocytes infected with HIV: intrinsic stability predicts lifelong persistence

scholarly article

High Efficacy of Saliva in Detecting SARS-CoV-2 by RT-PCR in Adults and Children

High rates of subsequent asymptomatic STIs and risky sexual behavior in patients initially presenting with primary HIV-1 infection

scientific article

High-throughput sequencing of human immunoglobulin variable regions with subtype identification.

scientific article

Higher risk of incident hepatitis C virus coinfection among men who have sex with men, in whom the HIV genetic bottleneck at transmission was wide

scientific article

Higher selection pressure from antiretroviral drugs in vivo results in increased evolutionary distance in HIV-1 pol.

scientific article published on June 1999

Hoarsness after a trip to the United States of America ⬇️

scientific article published on October 30, 2013

Host and viral genetic correlates of clinical definitions of HIV-1 disease progression

scientific article

How effectively can HIV phylogenies be used to measure heritability?

scientific article published on January 2013

Human Immunodeficiency Virus Drug Resistance: 2018 Recommendations of the International Antiviral Society-USA Panel

scientific article published on 01 January 2019

Human immunodeficiency virus type 1 fitness is a determining factor in viral rebound and set point in chronic infection

scientific article

Human immunodeficiency virus-specific CD8(+) T-cell responses do not predict viral growth and clearance rates during structured intermittent antiretroviral therapy

scientific article

Human papillomavirus antibody response following HAART initiation among MSM.

scientific article published on February 2017

Humoral immunity to HIV-1: kinetics of antibody responses in chronic infection reflects capacity of immune system to improve viral set point

scientific article published on 8 June 2004

IFNL3/4 polymorphisms are associated with AIDS-related Kaposiʼs sarcoma

scholarly article by Stéphanie Bibert et al published September 2018 in AIDS

IL-4 polymorphism influences susceptibility to Pneumocystis jirovecii pneumonia in HIV-positive patients

scientific article published on 01 September 2019

Identification of Siglec-1 null individuals infected with HIV-1.

scientific article published on 11 August 2016

Immune recovery in HIV-infected patients after Candida esophagitis is impaired despite long-term antiretroviral therapy

scientific article published on 05 May 2016

Impact of HIV-1 reverse transcriptase polymorphism F214L on virological response to thymidine analogue-based regimens in antiretroviral therapy (ART)-naive and ART-experienced patients

scientific article published on 19 September 2007

Impact of TNFα, LTα, FcγRII and complement receptor on HIV-1 trapping in lymphoid tissue from HIV-infected patients

article

Impact of Tenofovir on Hepatitis Delta Virus Replication in the Swiss Human Immunodeficiency Virus Cohort Study

scientific article published on 11 February 2017

Impact of genotypic resistance testing on selection of salvage regimen in clinical practice.

scientific article published in October 2003

Impact of scaling up dolutegravir on antiretroviral resistance in South Africa: A modeling study

scientific article published on 14 December 2020

Impact of the M184V/I Mutation on the Efficacy of Abacavir/Lamivudine/Dolutegravir Therapy in HIV Treatment-Experienced Patients

scientific article published on 12 July 2019

Implementation of raltegravir in routine clinical practice: selection criteria for choosing this drug, virologic response rates, and characteristics of failures

scientific article published in April 2010

Improved darunavir genotypic mutation score predicting treatment response for patients infected with HIV-1 subtype B and non-subtype B receiving a salvage regimen

scientific article published on 28 January 2016

Improved virological outcome in White patients infected with HIV-1 non-B subtypes compared to subtype B.

scientific article published on 13 October 2011

In Vivo Profiling and Distribution of Known and Novel Phase I and Phase II Metabolites of Efavirenz in Plasma, Urine, and Cerebrospinal Fluid

scientific article

In Vivo and in Vitro Proteome Analysis of Human Immunodeficiency Virus (HIV)-1-infected, Human CD4+ T Cells

scientific article

In vivo analysis of efavirenz metabolism in individuals with impaired CYP2A6 function

scientific article published in April 2009

In vivo and in vitro escape from neutralizing antibodies 2G12, 2F5, and 4E10.

scientific article

In vivo efficacy of human immunodeficiency virus neutralizing antibodies: estimates for protective titers

scientific article

Incidence of HIV-1 Drug Resistance Among Antiretroviral Treatment–Naive Individuals Starting Modern Therapy Combinations ⬇️

scientific article published on November 4, 2011

Increased CHIP Prevalence Amongst People Living with HIV

scientific article published on 07 November 2020

Increases in Condomless Sex in the Swiss HIV Cohort Study

scientific article published in April 2015

Infections during Immunosuppression

scientific article published on 01 June 2018

Inferring epidemic contact structure from phylogenetic trees

scientific article published on 8 March 2012

Inferring the age difference in HIV transmission pairs by applying phylogenetic methods on the HIV transmission network of the Swiss HIV Cohort Study

article

Interaction of the gp120 V1V2 loop with a neighboring gp120 unit shields the HIV envelope trimer against cross-neutralizing antibodies

scientific article

Intermittent and sustained low-level HIV viral rebound in patients receiving potent antiretroviral therapy

article

Is the virulence of HIV changing? A meta-analysis of trends in prognostic markers of HIV disease progression and transmission

scientific article

Kommentar I zum Fall: „Heimlicher Transfer von HIV-Medikamenten nach Afrika“

article

Large-scale inference of conjunctive Bayesian networks

scientific article

Latently-infected CD4+ T cells are enriched for HIV-1 Tat variants with impaired transactivation activity

scientific article published on 5 March 2009

Lepromatous leprosy with erythema nodosum leprosum as immune reconstitution inflammatory syndrome in an HIV-1 infected patient after initiation of antiretroviral therapy

scientific article published on December 2009

Life expectancy in HIV-positive persons in Switzerland: matched comparison with general population

scientific article

Limited clinical benefit of minority K103N and Y181C-variant detection in addition to routine genotypic resistance testing in antiretroviral therapy-naive patients

scientific article published on September 2014

Liver failure after long-term nucleoside antiretroviral therapy

scientific article

Long-lasting protection of activity of nucleoside reverse transcriptase inhibitors and protease inhibitors (PIs) by boosted PI containing regimens

scientific article

Long-term multiple-dose pharmacokinetics of human monoclonal antibodies (MAbs) against human immunodeficiency virus type 1 envelope gp120 (MAb 2G12) and gp41 (MAbs 4E10 and 2F5).

scientific article

Long-term trends of HIV type 1 drug resistance prevalence among antiretroviral treatment-experienced patients in Switzerland

scientific article published in April 2009

Longitudinal analysis of patterns and predictors of changes in self-reported adherence to antiretroviral therapy: Swiss HIV Cohort Study

scientific article published in June 2010

Low human immunodeficiency virus envelope diversity correlates with low in vitro replication capacity and predicts spontaneous control of plasma viremia after treatment interruptions

scientific article

Low prevalence of transmitted HIV-1 drug resistance detected by a dried blood spot (DBS)-based next-generation sequencing (NGS) method in newly diagnosed individuals in Cameroon in the years 2015-16.

scientific article published on 7 April 2018

Low-frequency drug-resistant HIV-1 and risk of virological failure to first-line NNRTI-based ART: a multicohort European case-control study using centralized ultrasensitive 454 pyrosequencing

scientific article

MPER-specific antibodies induce gp120 shedding and irreversibly neutralize HIV-1. ⬇️

scientific article

MRI and PET-CT Failed to Differentiate Between Hepatic Malignancy and Brucelloma.

scientific article

Marked increase of the astrocytic marker S100B in the cerebrospinal fluid of HIV-infected patients on LPV/r-monotherapy

scientific article

Minor protease inhibitor mutations at baseline do not increase the risk for a virological failure in HIV-1 subtype B infected patients

scientific article (publication date: 2012)

Minority K65R variants and early failure of antiretroviral therapy in HIV-1-infected Eritrean immigrant

scientific article published on October 2011

Minority quasispecies of drug-resistant HIV-1 that lead to early therapy failure in treatment-naive and -adherent patients

scientific article

Molecular Analyses Define Vα7.2-Jα33+ MAIT Cell Depletion in HIV Infection: A Case-Control Study

scientific article

Molecular epidemiology reveals long-term changes in HIV type 1 subtype B transmission in Switzerland

scientific article published in May 2010

Monocyte-derived macrophages exhibit distinct and more restricted HIV-1 integration site repertoire than CD4(+) T cells

scientific article published on 12 April 2016

Mortality from suicide among people living with HIV and the general Swiss population: 1988-2017

scientific article published on 01 August 2019

Multifactorial seroprofiling dissects the contribution of pre-existing human coronaviruses responses to SARS-CoV-2 immunity

scientific article published on 18 November 2021

Multiple sites in HIV-1 reverse transcriptase associated with virological response to combination therapy

scientific article

Mutational Correlates of Virological Failure in Individuals Receiving a WHO-Recommended Tenofovir-Containing First-Line Regimen: An International Collaboration

scientific article published on 19 March 2017

New onset of kaposi sarcoma in a human immunodeficiency virus-1-infected homosexual man, despite early antiretroviral treatment, sustained viral suppression, and immune restoration

scientific article published on March 2014

Next-generation sequencing of HIV-1 RNA genomes: determination of error rates and minimizing artificial recombination

scientific article

No Effect of Pegylated Interferon-alpha on Total Hiv-1 DNA Load in HIV-1/HCV Coinfected Patients

scientific article

No longitudinal mitochondrial DNA sequence changes in HIV-infected individuals with and without lipoatrophy

scientific article

Noninferiority of Simplified Dolutegravir Monotherapy Compared to Continued Combination Antiretroviral Therapy That Was Initiated During Primary Human Immunodeficiency Virus Infection: A Randomized, Controlled, Multisite, Open-label, Noninferiority

scientific article published on 01 October 2019

OMIP-047: High-Dimensional phenotypic characterization of B cells.

scientific article

Optimized virus disruption improves detection of HIV-1 p24 in particles and uncovers a p24 reactivity in patients with undetectable HIV-1 RNA under long-term HAART.

scientific article published in August 2006

Origin of minority drug-resistant HIV-1 variants in primary HIV-1 infection

scientific article published on 11 July 2013

Outcomes of patients on dual-boosted PI regimens: experience of the Swiss HIV cohort study

scientific article

Parent-offspring regression to estimate the heritability of an HIV-1 trait in a realistic setup

scientific article

Partial rescue of V1V2 mutant infectivity by HIV-1 cell-cell transmission supports the domain's exceptional capacity for sequence variation

scientific article

Persistence of lamivudine-sensitive HIV-1 quasispecies in the presence of lamivudine in vitro and in vivo

scientific article published in April 2007

Persistence of transmitted HIV-1 drug resistance mutations associated with fitness costs and viral genetic backgrounds

scientific article (publication date: March 2015)

Pharmacogenetics-based population pharmacokinetic analysis of etravirine in HIV-1 infected individuals

article

Pharmacokinetics of an HIV-1 gp120-specific chimeric antibody in patients with HIV-1 disease

article

Phylodynamics on local sexual contact networks

scientific article

Phylogenetic approach reveals that virus genotype largely determines HIV set-point viral load

scientific article published on 30 September 2010

Polymorphic mutations associated with the emergence of the multinucleoside/tide resistance mutations 69 insertion and Q151M.

scientific article published in February 2012

Population pharmacokinetic analysis and pharmacogenetics of raltegravir in HIV-positive and healthy individuals

scientific article

Positive in vivo selection of the HIV-1 envelope protein gp120 occurs at surface-exposed regions

scientific article published on 5 June 2007

Potent human immunodeficiency virus-neutralizing and complement lysis activities of antibodies are not obligatorily linked

scientific article published on 30 January 2008

Precise identification of a human immunodeficiency virus type 1 antigen processing mutant

scientific article published on 15 November 2006

Predicting HIV-1 transmission and antibody neutralization efficacy in vivo from stoichiometric parameters.

scientific article

Predictive value of known and novel alleles of CYP2B6 for efavirenz plasma concentrations in HIV-infected individuals.

scientific article published on 18 January 2007

Predictors for the emergence of the 2 multi-nucleoside/nucleotide resistance mutations 69 insertion and Q151M and their impact on clinical outcome in the Swiss HIV cohort study

scientific article published in February 2011

Predictors of CD4+ T-Cell Counts of HIV Type 1–Infected Persons After Virologic Failure of All 3 Original Antiretroviral Drug Classes ⬇️

scientific article published on 07 December 2012

Predictors of optimal viral suppression in patients switched to abacavir, lamivudine, and zidovudine: the Swiss HIV Cohort Study

scientific article published in October 2007

Prevalence and predictive value of intermittent viremia with combination hiv therapy

scientific article published in July 2001

Prevalence and predictors for homo- and heterosubtypic antibodies against influenza a virus

scientific article

Prevalence of etravirine mutations and impact on response to treatment in routine clinical care: the Swiss HIV Cohort Study (SHCS).

scientific article published in September 2009

Privacy-preserving genomic testing in the clinic: a model using HIV treatment.

scientific article published on 14 January 2016

Productive human immunodeficiency virus type 1 infection in peripheral blood predominantly takes place in CD4/CD8 double-negative T lymphocytes

scientific article

Profound depletion of HIV-1 transcription in patients initiating antiretroviral therapy during acute infection

scientific article (publication date: 12 October 2010)

Progressive multi-focal leukoencephalopathy as a rare lethal complication in untreated sarcoidosis

scientific article published on 28 June 2012

Proviral HIV-DNA predicts viral rebound and viral setpoint after structured treatment interruptions

article

Pulmonary Toxoplasmosis, a Rare but Severe Manifestation of a Common Opportunistic Infection in Late HIV Presenters: Report of Two Cases

article

Quantifiable cytotoxic T lymphocyte responses and HLA-related risk of progression to AIDS

scholarly article

Quantification of infectious HIV-1 plasma viral load using a boosted in vitro infection protocol

scientific article

Quantifying the fitness cost of HIV-1 drug resistance mutations through phylodynamics

scientific article published on 20 February 2018

Quantifying the turnover of transcriptional subclasses of HIV-1-infected cells

scientific article

Randomized controlled study demonstrating failure of LPV/r monotherapy in HIV: the role of compartment and CD4-nadir ⬇️

scientific article published on September 24, 2010

Rational design of HIV-1 fluorescent hydrolysis probes considering phylogenetic variation and probe performance

scientific article published on 29 January 2010

Recovery of Replication-Competent HIV Despite Prolonged Suppression of Plasma Viremia ⬇️

scientific article (publication date: 14 November 1997)

Reduced Relative Sensitivity of the Elecsys SARS-CoV-2 Antigen Assay in Saliva Compared to Nasopharyngeal Swabs

scholarly article

Reduction of HIV-1 in blood and lymph nodes following potent antiretroviral therapy and the virologic correlates of treatment failure.

scientific article published on November 1997

Replicative phenotyping adds value to genotypic resistance testing in heavily pre-treated HIV-infected individuals--the Swiss HIV Cohort Study

scientific article

Reply to Ambrosioni et al

scientific article published on 01 May 2019

Reply to correspondence 'Conserved signatures indicate HIV-1 transmission is under strong selection and thus is not a "stochastic" process' by Gonzalez et al., Retrovirology 2017.

scientific article published on 24 February 2017

Residual HIV-RNA levels persist for up to 2.5 years in peripheral blood mononuclear cells of patients on potent antiretroviral therapy

scientific article published on August 2000

Residual HIV-specific CD4 and CD8 T cell frequencies after prolonged antiretroviral therapy reflect pretreatment plasma virus load

scientific article published in November 2002

Residual cell-associated unspliced HIV-1 RNA in peripheral blood of patients on potent antiretroviral therapy represents intracellular transcripts.

scientific article published on June 2002

Residual human immunodeficiency virus (HIV) Type 1 RNA and DNA in lymph nodes and HIV RNA in genital secretions and in cerebrospinal fluid after suppression of viremia for 2 years

scientific article published on 10 April 2001

Response to Calcagno comment on "Higher CNS penetration-effectiveness of long-term combination antiretroviral therapy is associated with better HIV-1 viral suppression in cerebrospinal fluid".

scientific article published in October 2013

Risk factors for and outcome of hyperlactatemia in HIV-infected persons: is there a need for routine lactate monitoring?

scientific article published on 29 July 2005

Role of microRNA modulation in the interferon-α/ribavirin suppression of HIV-1 in vivo

scientific article

Role of retroviral restriction factors in the interferon-α-mediated suppression of HIV-1 in vivo

scientific article published on 6 February 2012

Self-reported nonadherence to antiretroviral therapy as a predictor of viral failure and mortality

scientific article published on October 2015

Sequence clusters in human immunodeficiency virus type 1 reverse transcriptase are associated with subsequent virological response to antiretroviral therapy

scientific article published in October 1999

Shifts in cell-associated HIV-1 RNA but not in episomal HIV-1 DNA correlate with new cycles of HIV-1 infection in vivo

scientific article published on 01 April 2003

Simple estimation of incident HIV infection rates in notification cohorts based on window periods of algorithms for evaluation of line-immunoassay result patterns

scientific article

Simultaneously estimating evolutionary history and repeated traits phylogenetic signal: applications to viral and host phenotypic evolution

scientific article

Social meets molecular: Combining phylogenetic and latent class analyses to understand HIV-1 transmission in Switzerland

scientific article published on 12 May 2014

Spontaneous Splenic Rupture as Manifestation of the Immune Reconstitution Inflammatory Syndrome in an HIV Type 1 Infected Patient with Tuberculosis

article

Spontaneous reactivation of latent HIV-1 promoters is linked to the cell cycle as revealed by a genetic-insulators-containing dual-fluorescence HIV-1-based vector.

scientific article published on 5 July 2018

Stable virulence levels in the HIV epidemic of Switzerland over two decades

article

Stimulation of HIV-specific cellular immunity by structured treatment interruption fails to enhance viral control in chronic HIV infection

scientific article

Subacute, tetracycline-responsive, granulomatous osteomyelitis in an adult man, consistent with Q fever infection

scientific article published on 9 December 2015

Successful Prevention of Transmission of Integrase Resistance in the Swiss HIV Cohort Study

scientific article published on 29 April 2016

Successful treatment with miltefosine of disseminated cutaneous leishmaniasis in a severely immunocompromised patient infected with HIV-1.

scientific article published on 27 April 2005

Systemic antibody responses to gut commensal bacteria during chronic HIV-1 infection

scientific article published on 21 April 2011

Tailored enrichment strategy detects low abundant small noncoding RNAs in HIV-1 infected cells

scientific article

The Cumulative Impact of Harm Reduction on the Swiss HIV Epidemic: Cohort Study, Mathematical Model, and Phylogenetic Analysis

article

The HCP5 single-nucleotide polymorphism: a simple screening tool for prediction of hypersensitivity reaction to abacavir

scientific article

The IFNL3/4 ΔG variant increases susceptibility to cytomegalovirus retinitis among HIV-infected patients

scientific article published on August 2014

The Interplay Between Host Genetic Variation, Viral Replication, and Microbial Translocation in Untreated HIV-Infected Individuals

scientific article

The comparative effectiveness of NRTI-sparing dual regimens in emulated trials using observational data from the Swiss HIV Cohort Study

scientific article published on 01 January 2019

The impact of transmission clusters on primary drug resistance in newly diagnosed HIV-1 infection

scientific article

The impact of vaccination on the breadth and magnitude of the antibody response to influenza A viruses in HIV-infected individuals

scientific article published on September 2015

The individualized genetic barrier predicts treatment response in a large cohort of HIV-1 infected patients

scientific article (publication date: 2013)

The orientation of HIV-1 gp120 binding to the CD4 receptor differentially modulates CD4+ T cell activation

scientific article

The prognostic value of different patterns of change in the CD4 lymphocyte counts in 420 symptom-free HIV-1-infected persons

scientific article published in May 1993

The role of migration and domestic transmission in the spread of HIV-1 non-B subtypes in Switzerland

scientific article published in October 2011

Tracing HIV-1 strains that imprint broadly neutralizing antibody responses

scientific article published in Nature

Tracing HIV-1 transmission: envelope traits of HIV-1 transmitter and recipient pairs

scientific article published on 05 September 2016

Transient detectable viremia and the risk of viral rebound in patients from the Swiss HIV Cohort Study

scientific article published on 21 September 2015

Transmission of HIV-1 drug resistance in Switzerland: a 10-year molecular epidemiology survey

scientific article published in October 2007

Treatment-naive individuals are the major source of transmitted HIV-1 drug resistance in men who have sex with men in the Swiss HIV Cohort Study

scientific article published on 21 October 2013

Triple-class virologic failure in HIV-infected patients undergoing antiretroviral therapy for up to 10 years

scientific article published in March 2010

Two Years of Viral Metagenomics in a Tertiary Diagnostics Unit: Evaluation of the First 105 Cases

scientific article published on 29 August 2019

Update of the Drug Resistance Mutations in HIV-1.

scientific article published on December 2008

Update of the drug resistance mutations in HIV-1: 2007.

scientific article published on August 2007

Update of the drug resistance mutations in HIV-1: December 2009.

scientific article

Update of the drug resistance mutations in HIV-1: December 2010.

scientific article published on December 2010

Update of the drug resistance mutations in HIV-1: March 2013.

scientific article published in February 2013

Update of the drug resistance mutations in HIV-1: Spring 2008

scientific article published on 01 April 2008

Using an Epidemiological Model for Phylogenetic Inference Reveals Density Dependence in HIV Transmission ⬇️

scientific article published on October 1, 2013

Viral Diversity Based on Next-Generation Sequencing of HIV-1 Provides Precise Estimates of Infection Recency and Time Since Infection

scientific article published on 01 June 2019

Viral Suppression Rates in Salvage Treatment With Raltegravir Improved With the Administration of Genotypic Partially Active or Inactive Nucleoside/Tide Reverse Transcriptase Inhibitors

Viral genetic variation accounts for a third of variability in HIV-1 set-point viral load in Europe

scientific article

Virologic and immunologic outcomes of treatment with integrase inhibitors in a real-world setting: The RESPOND cohort consortium

scientific article published on 31 December 2020

Virological monitoring and resistance to first-line highly active antiretroviral therapy in adults infected with HIV-1 treated under WHO guidelines: a systematic review and meta-analysis

scientific article published on July 2009

Virological outcome and management of persistent low-level viraemia in HIV-1-infected patients: 11 years of the Swiss HIV Cohort Study

scientific article published on 25 June 2014

Virus isolates during acute and chronic human immunodeficiency virus type 1 infection show distinct patterns of sensitivity to entry inhibitors

scientific article

Whole genome deep sequencing of HIV-1 reveals the impact of early minor variants upon immune recognition during acute infection

scientific article published on 8 March 2012

Widespread B cell perturbations in HIV-1 infection afflict naive and marginal zone B cells

scientific article published on 20 June 2019

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