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List of works by Ralf Koebnik

<i>Xanthomonas hortorum</i> – beyond gardens: Current taxonomy, genomics, and virulence repertoires

scientific article published in 2022

A Community-Curated DokuWiki Resource on Diagnostics, Diversity, Pathogenicity, and Genetic Control of Xanthomonads

scientific article published in 2024

A MLVA genotyping scheme for global surveillance of the citrus pathogen Xanthomonas citri pv. citri suggests a worldwide geographical expansion of a single genetic lineage

scientific article (publication date: 2014)

A Pathovar of Infecting Wild Grasses Provides Insight Into the Evolution of Pathogenicity in Rice Agroecosystems

scientific article published on 30 April 2019

A TonB-dependent transporter is required for secretion of protease PopC across the bacterial outer membrane

scientific article published on 25 March 2019

A knowledge-based molecular screen uncovers a broad-spectrum OsSWEET14 resistance allele to bacterial blight from wild rice.

scientific article

A minimal transmembrane beta-barrel platform protein studied by nuclear magnetic resonance

scientific article

Addressing the New Global Threat of Xylella fastidiosa

scientific article published on 01 February 2019

Adhesion mechanisms of plant-pathogenic Xanthomonadaceae

scientific article published on January 2011

An Optimized Microsatellite Scheme for Assessing Populations of Xanthomonas phaseoli pv. manihotis

scientific article published on 25 March 2019

An atypical class of non-coding small RNAs is produced in rice leaves upon bacterial infection

scientific article published on 17 December 2021

An improved method for TAL effectors DNA-binding sites prediction reveals functional convergence in TAL repertoires of Xanthomonas oryzae strains

scientific article

Analysis of Xanthomonas oryzae pv. oryzicola population in Mali and Burkina Faso reveals a high level of genetic and pathogenic diversity

scientific article published in May 2014

AnnoTALE: bioinformatics tools for identification, annotation, and nomenclature of TALEs from Xanthomonas genomic sequences

scientific article

CHAPTER 21: Targeting of the rice transcriptome by TAL effectors of Xanthomonas oryzae

CRISPR elements provide a new framework for the genealogy of the citrus canker pathogen Xanthomonas citri pv. citri

scientific article published on 02 December 2019

Chapter 18 Outer membrane proteins of Escherichia coli: mechanism of sorting and regulation of synthesis

scholarly article published 1994

Characterization of the Xanthomonas translucens Complex Using Draft Genomes, Comparative Genomics, Phylogenetic Analysis, and Diagnostic LAMP Assays

scientific article published on 23 January 2017

Colonization of Rice Leaf Blades by an African Strain of Xanthomonas oryzae pv. oryzae Depends on a New TAL Effector That Induces the Rice Nodulin-3 Os11N3 Gene

article

Comparative Genomics Identifies a Novel Conserved Protein, HpaT, in Proteobacterial Type III Secretion Systems that Do Not Possess the Putative Translocon Protein HrpF.

scientific article published on 26 June 2017

Comparative Genomics and Evolution of Bacterial Type III Effectors

Comparative genomics of a cannabis pathogen reveals insight into the evolution of pathogenicity in Xanthomonas

scientific article

Comparative genomics reveals diversity among xanthomonads infecting tomato and pepper.

scientific article

Comparative proteomics reveal new HrpX-regulated proteins of Xanthomonas oryzae pv. oryzae

scientific article

Complete Genome Sequence of Xanthomonas campestris pv. <i>campestris</i> SB80, a Race 4 Strain Isolated from White Head Cabbage in Turkey

publication published on 22 February 2022

Confirmation of Bacterial Leaf Streak Caused by Xanthomonas oryzae pv. oryzicola on Rice in Madagascar

article

Confirmation of Bacterial Leaf Streak of Rice Caused by Xanthomonas oryzae pv. oryzicola in Vietnam

scholarly article by T. T. Tran et al published December 2015 in Plant Disease

Coupling site-directed mutagenesis with high-level expression: large scale production of mutant porins from E. coli

article

Development of a variable number of tandem repeats typing scheme for the bacterial rice pathogen Xanthomonas oryzae pv. oryzicola

scientific article

Domain structure of HrpE, the Hrp pilus subunit of Xanthomonas campestris pv. vesicatoria

scientific article

Draft Genome Sequence of Xanthomonas axonopodis pv. allii Strain CFBP 6369.

scientific article published on 31 July 2014

Draft Genome Sequence of Xanthomonas translucens pv. graminis Pathotype Strain CFBP 2053.

scientific article published on 8 October 2015

Draft Genome Sequence of the Flagellated Xanthomonas fuscans subsp. fuscans Strain CFBP 4884.

scientific article published on 25 September 2014

Draft Genome Sequence of the Xanthomonas cassavae Type Strain CFBP 4642.

scientific article published on 29 August 2013

Draft Genome Sequences of Two Xanthomonas euvesicatoria Strains from the Balkan Peninsula

scientific article published on 5 February 2015

Draft Genome Sequences of Two Xanthomonas vesicatoria Strains from the Balkan Peninsula.

scientific article published on 12 February 2015

Ectopic activation of the rice NLR heteropair RGA4/RGA5 confers resistance to bacterial blight and bacterial leaf streak diseases

scientific article

Effector Mimics and Integrated Decoys, the Never-Ending Arms Race between Rice and Xanthomonas oryzae

scientific article published on 28 March 2017

Efficient enrichment cloning of TAL effector genes from

article

Efficient enrichment cloning of TAL effector genes fromXanthomonas

article

Enterobacter cloacae, an Emerging Plant-Pathogenic Bacterium Affecting Chili Pepper Seedlings.

scientific article published in February 2018

Extended Sugar Slide Function for the Periplasmic Coiled Coil Domain of ScrY

article by Fabrice Dumas et al published July 2000 in Journal of Molecular Biology

First Report of Bacterial Leaf Blight of Rice Caused by Xanthomonas oryzae pv. oryzae in Benin

scholarly article by O. Afolabi et al published February 2016 in Plant Disease

First Report of Xanthomonas oryzae pv. oryzicola Causing Bacterial Leaf Streak of Rice in Burundi

article

First Report of Xanthomonas oryzae pv. oryzicola Causing Bacterial Leaf Streak of Rice in Uganda

article

First Report of a New Bacterial Leaf Blight of Rice Caused by Pantoea ananatis and Pantoea stewartii in Benin

scholarly article by K. Kini et al published January 2017 in Plant Disease

First Report of a New Bacterial Leaf Blight of Rice Caused byPantoea ananatisandPantoea stewartiiin Togo

Five phylogenetically close rice SWEET genes confer TAL effector-mediated susceptibility to Xanthomonas oryzae pv. oryzae

scientific article

Functional analysis of African Xanthomonas oryzae pv. oryzae TALomes reveals a new susceptibility gene in bacterial leaf blight of rice

article

Functional and Genome Sequence-Driven Characterization of Effector Gene Repertoires Reveals Novel Variants With Altered Specificities in Closely Related Malian pv. Strains

article

Genome Resource of Barley Bacterial Blight and Leaf Streak Pathogen Xanthomonas translucens pv. translucens strain UPB886

scientific article published on 28 October 2019

Genome Resources of Three West African Strains of Pantoea ananatis Causing Bacterial Blight and Grain Discoloration of Rice

scientific article published on 27 April 2020

Genome mining reveals the genus Xanthomonas to be a promising reservoir for new bioactive non-ribosomally synthesized peptides

scientific article

Genome sequence and rapid evolution of the rice pathogen Xanthomonas oryzae pv. oryzae PXO99A

article

Genome sequence and rapid evolution of the rice pathogen Xanthomonas oryzae pv. oryzae PXO99A.

scientific article

Genome sequence of Xanthomonas fuscans subsp. fuscans strain 4834-R reveals that flagellar motility is not a general feature of xanthomonads

scientific article

Genomic insights into strategies used by Xanthomonas albilineans with its reduced artillery to spread within sugarcane xylem vessels

scientific article

Genomic survey of pathogenicity determinants and VNTR markers in the cassava bacterial pathogen Xanthomonas axonopodis pv. Manihotis strain CIO151.

scientific article

Genomics and transcriptomics of Xanthomonas campestris species challenge the concept of core type III effectome

scientific article

High-Quality Draft Genome Sequence of Curtobacterium sp. Strain Ferrero

scientific article

High-Quality Draft Genome Sequence of Xanthomonas alfalfae subsp. alfalfae Strain CFBP 3836.

scientific article published on 12 December 2013

High-Quality Draft Genome Sequence of the Xanthomonas translucens pv. cerealis Pathotype Strain CFBP 2541.

scientific article published on 12 February 2015

High-Quality Draft Genome Sequences of Two Xanthomonas Pathotype Strains Infecting Aroid Plants

scientific article published on September 2016

High-Quality Draft Genome Sequences of Two Xanthomonas citri pv. malvacearum Strains.

scientific article published on 29 August 2013

High-Quality Draft Genome Sequences of Xanthomonas axonopodis pv. glycines Strains CFBP 2526 and CFBP 7119.

scientific article published on 12 December 2013

Horizontal gene transfer plays a major role in the pathological convergence of Xanthomonas lineages on common bean

article

Identification of non-TAL effectors in Xanthomonas oryzae pv. oryzae Chinese strain 13751 and analysis of their role in the bacterial virulence

scientific article

Insights into Genome Plasticity and Pathogenicity of the Plant Pathogenic Bacterium Xanthomonas campestris pv. vesicatoria Revealed by the Complete Genome Sequence

scientific article

Membrane Assembly of Circularly Permuted Variants of theE. coliOuter Membrane Protein OmpA ⬇️

scientific article published on July 28, 1995

Membrane topology and assembly of the outer membrane protein OmpA of Escherichia coli K12.

scientific article

Membrane topology of conserved components of the type III secretion system from the plant pathogen Xanthomonas campestris pv. vesicatoria

scientific article published on 8 April 2010

Molecular Typing Reveals High Genetic Diversity of Xanthomonas translucens Strains Infecting Small-Grain Cereals in Iran

scientific article published on 01 October 2019

Multilocus sequence analysis and type III effector repertoire mining provide new insights into the evolutionary history and virulence of Xanthomonas oryzae.

scientific article published on 19 September 2011

Multilocus sequence analysis reveals a novel phylogroup of Xanthomonas euvesicatoria pv. perforans causing bacterial spot of tomato in Iran

New multilocus variable-number tandem-repeat analysis tool for surveillance and local epidemiology of bacterial leaf blight and bacterial leaf streak of rice caused by Xanthomonas oryzae.

scientific article

OmpA

Passing GO (gene ontology) in plant pathogen biology: a report from the Xanthomonas Genomics Conference.

scientific article published on 5 October 2009

Pathogenicity and phylogenetic analysis of Clavibacter michiganensis strains associated with tomato plants in Iran

article

Population typing of the causal agent of cassava bacterial blight in the Eastern Plains of Colombia using two types of molecular markers

scientific article

Positive selection of the Hrp pilin HrpE of the plant pathogen Xanthomonas

scientific article published on February 2006

Proposal for a peptidoglycan-associating alpha-helical motif in the C-terminal regions of some bacterial cell-surface proteins

scientific article

Refinement of the Xanthomonas campestris pv. vesicatoria hrpD and hrpE operon structure

scientific article

Repeated gain and loss of a single gene modulates the evolution of vascular plant pathogen lifestyles

scientific article published on 13 November 2020

Specific binding of the Xanthomonas campestris pv. vesicatoria AraC-type transcriptional activator HrpX to plant-inducible promoter boxes

scientific article

Stability of trimeric OmpF porin: the contributions of the latching loop L2

scientific article

Structural organization of TonB-dependent receptors

scientific article published on 01 August 1993

Structure and function of bacterial outer membrane proteins: barrels in a nutshell

scientific article

TALE1 from Xanthomonas axonopodis pv. manihotis acts as a transcriptional activator in plant cells and is important for pathogenicity in cassava plants

scientific article

Targeted promoter editing for rice resistance to Xanthomonas oryzae pv. oryzae reveals differential activities for SWEET14-inducing TAL effectors

scientific article

The TonB protein of Yersinia enterocolitica and its interactions with TonB-box proteins

scientific article published on February 1993

The Xanthomonas Ax21 protein is processed by the general secretory system and is secreted in association with outer membrane vesicles

scientific article published in 2014

The complete genome sequence of Xanthomonas albilineans provides new insights into the reductive genome evolution of the xylem-limited Xanthomonadaceae

scientific article

The complete genome sequence of Xanthomonas theicola, the causal agent of canker on tea plants, reveals novel secretion systems in clade-1 xanthomonads

scientific article published on 30 September 2020

The missing link: Bordetella petrii is endowed with both the metabolic versatility of environmental bacteria and virulence traits of pathogenic Bordetellae

scientific article

The rhizobial type III effector ErnA confers the ability to form nodules in legumes

scientific article published on 07 October 2019

The role of bacterial pili in protein and DNA translocation

scientific article

The type III effectors of Xanthomonas

scientific article

The type III-dependent Hrp pilus is required for productive interaction of Xanthomonas campestris pv. vesicatoria with pepper host plants

scientific article

TonB-dependent trans-envelope signalling: the exception or the rule?

scientific article

Transcriptome and proteome analysis reveal new insight into proximal and distal responses of wheat to foliar infection by Xanthomonas translucens.

scientific article published on 31 August 2017

Transmembrane Signaling across the Ligand-Gated FhuA Receptor

Two new complete genome sequences offer insight into host and tissue specificity of plant pathogenic Xanthomonas spp.

scientific article

Using Ecology, Physiology, and Genomics to Understand Host Specificity in Xanthomonas

scientific article published on June 2016

Whole-Genome Sequences of Xanthomonas euvesicatoria Strains Clarify Taxonomy and Reveal a Stepwise Erosion of Type 3 Effectors.

scientific article published on 09 December 2016

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