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List of works by Boyke Bunk

A Clostridioides difficile bacteriophage genome encodes functional binary toxin-associated genes

scientific article published on 16 February 2017

A collection of bacterial isolates from the pig intestine reveals functional and taxonomic diversity

scientific article published on 15 December 2020

A publicly accessible database for Clostridioides difficile genome sequences supports tracing of transmission chains and epidemics

scientific article published on 29 July 2020

A short story about a big magic bug.

scientific article published on 4 January 2010

A transferable plasticity region in Campylobacter coli allows isolates of an otherwise non-glycolytic food-borne pathogen to catabolize glucose

scientific article

BacDive – The Bacterial Diversity Metadatabase in 2016

research article

BacDive – the Bacterial Diversity Metadatabase

research article

Caldisalinibacter kiritimatiensisgen. nov., sp. nov., a Moderately Thermohalophilic Thiosulfate-Reducing Bacterium from a Hypersaline Microbial Mat

article

Changes in prokaryotic community composition accompanying a pronounced temperature shift of a shallow marine thermal brine pool (Panarea Island, Italy).

scientific article published on 26 February 2015

Characterization and genome comparisons of three Achromobacter phages of the family Siphoviridae

scientific article published on 29 March 2017

Characterization of JG024, a pseudomonas aeruginosa PB1-like broad host range phage under simulated infection conditions.

scientific article

Characterization of the first cultured representative of Verrucomicrobia subdivision 5 indicates the proposal of a novel phylum

scientific article published on 14 June 2016

Characterization of the first cultured representative of a Bacteroidetes clade specialized on the scavenging of cyanobacteria

scientific article

Chromera velia, endosymbioses and the rhodoplex hypothesis--plastid evolution in cryptophytes, alveolates, stramenopiles, and haptophytes (CASH lineages)

scientific article published on March 2014

Chromosomal Locations of mcr-1 and bla CTX-M-15 in Fluoroquinolone-Resistant Escherichia coli ST410.

scientific article published on 15 September 2016

Cobaviruses – a new globally distributed phage group infecting Rhodobacteraceae in marine ecosystems

scientific article published on 04 February 2019

Comparative Genomics Reveal a Flagellar System, a Type VI Secretion System and Plant Growth-Promoting Gene Clusters Unique to the Endophytic Bacterium

scientific article published in 2018

Comparative Transcriptomic Profiling of Yersinia enterocolitica O:3 and O:8 Reveals Major Expression Differences of Fitness- and Virulence-Relevant Genes Indicating Ecological Separation

article

Comparative genome and phenotypic analysis of three Clostridioides difficile strains isolated from a single patient provide insight into multiple infection of C. difficile

scientific article published on 2 January 2018

Comparative genomic analysis of eight novel haloalkaliphilic bacteriophages from Lake Elmenteita, Kenya

article

Complete Genome Sequence of Highly Adherent Pseudomonas aeruginosa Small-Colony Variant SCV20265

scientific article published on 23 January 2014

Complete Genome Sequence of Kyrpidia sp. Strain EA-1, a Thermophilic Knallgas Bacterium, Isolated from the Azores

scientific article published on 18 January 2018

Complete Genome Sequence of a CTX-M-15-Producing Klebsiella pneumoniae Outbreak Strain from Multilocus Sequence Type 514.

scientific article published on 9 July 2015

Complete Genome Sequence of blaCTX-M-27-Encoding Escherichia coli Strain H105 of Sequence Type 131 Lineage C1/H30R.

scientific article

Complete Genome Sequence of the Barley Pathogen Xanthomonas translucens pv. translucens DSM 18974T (ATCC 19319T).

scientific article published on December 2016

Complete Genome Sequence of the Clostridium difficile Type Strain DSM 1296T.

scientific article published on 8 October 2015

Complete Genome Sequence of the Novel Temperate Clostridium difficile Phage phiCDIF1296T.

scientific article published on 20 August 2015

Complete Genome Sequence of the Silicimonas algicola Type Strain, a Representative of the Marine Group Isolated from the Cell Surface of the Marine Diatom Thalassiosira delicatula

Complete Genome Sequence of the Urethral Catheter Isolate Myroides sp. A21.

scientific article published on 5 March 2015

Complete Genome Sequences of Three Multidrug-Resistant Clinical Isolates of Streptococcus pneumoniae Serotype 19A with Different Susceptibilities to the Myxobacterial Metabolite Carolacton

scientific article published on 16 February 2017

Complete Genome and Plasmid Sequences of Staphylococcus aureus EDCC 5055 (DSM 28763), Used To Study Implant-Associated Infections

scientific article published on 23 February 2017

Complete Genome sequence of the nematicidal Bacillus thuringiensis MYBT18246.

scientific article published on 24 August 2017

Complete genome sequence and description of Salinispira pacifica gen. nov., sp. nov., a novel spirochaete isolated form a hypersaline microbial mat

scientific article

Complete genome sequence of the bioleaching bacterium Leptospirillum sp. group II strain CF-1.

scientific article published on 4 February 2016

Construction and characterization of nitrate and nitrite respiring Pseudomonas putida KT2440 strains for anoxic biotechnical applications

scientific article published on 02 October 2012

Convergent Loss of ABC Transporter Genes From Clostridioides difficile Genomes Is Associated With Impaired Tyrosine Uptake and p-Cresol Production

scientific article

Designing the MIRRI information system

Detection of translocatable units in a blaCTX-M-15 extended-spectrum β-lactamase-producing ST131 Escherichia coli isolate using a hybrid sequencing approach

scientific article published in February 2016

Divergent evolution in the genomes of closely related lacertids, Lacerta viridis and L. bilineata, and implications for speciation

Diversity of prokaryotic community at a shallow marine hydrothermal site elucidated by Illumina sequencing technology

scientific article

Enhanced whole exome sequencing by higher DNA insert lengths.

scientific article

Enterobacter bugandensis: a novel enterobacterial species associated with severe clinical infection

scientific article published on 29 March 2018

First Complete Genome Sequence of a Subdivision 6 Acidobacterium Strain

scientific article

First Report of Kosakonia radicincitans Bacteraemia from Europe (Austria) - Identification and Whole-Genome Sequencing of Strain DSM 107547

scientific article published on 06 February 2020

First genome sequences of Achromobacter phages reveal new members of the N4 family

scientific article published on 27 January 2014

Fuerstia marisgermanicae gen. nov., sp. nov., an Unusual Member of the Phylum Planctomycetes from the German Wadden Sea.

scientific article

GeneReporter--sequence-based document retrieval and annotation

scientific article

Genome Analysis of the Carbapenem- and Colistin-Resistant Escherichia coli Isolate NRZ14408 Reveals Horizontal Gene Transfer Pathways towards Panresistance and Enhanced Virulence

scientific article published on 17 January 2017

Genome Analysis of the Fruiting Body-Forming Myxobacterium Chondromyces crocatus Reveals High Potential for Natural Product Biosynthesis

scientific article

Genome Resequencing of the Virulent and Multidrug-Resistant Reference Strain Clostridium difficile 630.

scientific article published on 9 April 2015

Genome Sequence of Escherichia coli E28, a Multidrug-Resistant Strain Isolated from a Chicken Carcass, and Its Spontaneously Inducible Prophage

scientific article published on June 2017

Genome Sequence of Prosthecochloris sp. Strain CIB 2401 of the Phylum Chlorobi

scientific article

Genome Sequence of the Small-Colony Variant Pseudomonas aeruginosa MH27, Isolated from a Chronic Urethral Catheter Infection

scientific article published on 23 January 2014

Genome and Methylome Variation in Helicobacter pylori With a cag Pathogenicity Island During Early Stages of Human Infection

scientific article published on 21 October 2017

Genome biology of a novel lineage of planctomycetes widespread in anoxic aquatic environments

scientific article

Genome sequence of the mud-dwelling archaeon Methanoplanus limicola type strain (DSM 2279(T)), reclassification of Methanoplanus petrolearius as Methanolacinia petrolearia and emended descriptions of the genera Methanoplanus and Methanolacinia

scientific article

Genome sequences of the biotechnologically important Bacillus megaterium strains QM B1551 and DSM319.

scientific article published on 24 June 2011

Genome-guided design of a defined mouse microbiota that confers colonization resistance against Salmonella enterica serovar Typhimurium

scientific article

Genomic and transcriptomic characterization of Pseudomonas aeruginosa small colony variants derived from a chronic infection model

scientific article published in 2019

Global occurrence and heterogeneity of the Roseobacter-clade species Ruegeria mobilis

scientific article published on 23 August 2016

Global occurrence and heterogeneity of the Roseobacter-clade species Ruegeria mobilis

scientific article published on February 2017

Global outbreak of severe Mycobacterium chimaera disease after cardiac surgery: a molecular epidemiological study

scientific article published on 12 July 2017

High metabolic versatility of different toxigenic and non-toxigenic Clostridioides difficile isolates

scientific article published on June 2017

High-Quality Whole-Genome Sequences of the Oligo-Mouse-Microbiota Bacterial Community

scientific article published on 19 October 2017

Host Specificity for Bacterial, Archaeal and Fungal Communities Determined for High- and Low-Microbial Abundance Sponge Species in Two Genera

scientific article published on 20 December 2017

Identification and targeted cultivation of abundant novel freshwater sphingomonads and analysis of their population substructure

scientific article

Identification of a Pseudomonas aeruginosa PAO1 DNA Methyltransferase, Its Targets, and Physiological Roles.

scientific article

Impact of rare codons and the functional coproduction of rate-limiting tRNAs on recombinant protein production in Bacillus megaterium.

scientific article

Inactivation of farR Causes High Rhodomyrtone Resistance and Increased Pathogenicity in Staphylococcus aureus.

scientific article published on 28 May 2019

Isolation, characterization and analysis of bacteriophages from the haloalkaline lake Elmenteita, Kenya

article

Kyrpidia spormannii sp. nov., a thermophilic, hydrogen-oxidizing, facultative autotroph, isolated from hydrothermal systems at São Miguel Island, and emended description of the genus Kyrpidia

scientific article published on 20 September 2018

Long-read DNA metabarcoding of ribosomal RNA in the analysis of fungi from aquatic environments

scientific article published on 23 September 2018

Manual curation and reannotation of the genomes of Clostridium difficile 630Δerm and C. difficile 630.

scientific article published on March 2017

MetaQuant: a tool for the automatic quantification of GC/MS-based metabolome data

scientific article published on 17 October 2006

Metabolic engineering of cobalamin (vitamin B12) production in Bacillus megaterium

scientific article published on 10 June 2009

Molecular basis of a bacterial-amphibian symbiosis revealed by comparative genomics, modeling, and functional testing

scientific article published in 2021

Monitoring microevolution of OXA-48-producing Klebsiella pneumoniae ST147 in a hospital setting by SMRT sequencing

scientific article published in October 2017

Novel bacterial taxa in a minimal lignocellulolytic consortium and their potential for lignin and plastics transformation

scientific article published in 2022

Optimization of antibody fragment production in Bacillus megaterium: the role of metal ions on protein secretion.

scientific article published on 27 July 2010

OxyR-dependent formation of DNA methylation patterns in OpvABOFF and OpvABON cell lineages of Salmonella enterica.

scientific article

PRODORIC (release 2009): a database and tool platform for the analysis of gene regulation in prokaryotes

scientific article published on 30 October 2008

Packaging of Dinoroseobacter shibae DNA into Gene Transfer Agent Particles Is Not Random

scientific article published on 9 January 2018

Paenibacillus larvae-Directed Bacteriophage HB10c2 and Its Application in American Foulbrood-Affected Honey Bee Larvae

scientific article published on 5 June 2015

Production of the Bioactive Compounds Violacein and Indolmycin Is Conditional in a maeA Mutant of Pseudoalteromonas luteoviolacea S4054 Lacking the Malic Enzyme

scientific article published on 16 September 2016

ROSY--a flexible and universal database and bioinformatics tool platform for Roseobacter related species

scientific article

Rapid and Consistent Evolution of Colistin Resistance in Extensively Drug-Resistant Pseudomonas aeruginosa during Morbidostat Culture

scientific article published on 19 June 2017

Rapid and consistent evolution of colistin resistance in Pseudomonas aeruginosa during morbidostat culture

article

SYSTOMONAS--an integrated database for systems biology analysis of Pseudomonas

scientific article published in January 2007

Sequencing and characterization of Pseudomonas aeruginosa phage JG004.

scientific article

Synchronous termination of replication of the two chromosomes is an evolutionary selected feature in Vibrionaceae

scientific article published on 5 March 2018

Systems biology of recombinant protein production in Bacillus megaterium

scientific article published on 01 January 2010

Systems biology of recombinant protein production using Bacillus megaterium

scientific article published in January 2011

The Biofilm Inhibitor Carolacton Enters Gram-Negative Cells: Studies Using a TolC-Deficient Strain of Escherichia coli

scientific article published on 27 September 2017

The Composite 259-kb Plasmid of Martelella mediterranea DSM 17316T-A Natural Replicon with Functional RepABC Modules from Rhodobacteraceae and Rhizobiaceae

scientific article published on 21 September 2017

The Global Catalogue of Microorganisms 10K type strain sequencing project: closing the genomic gaps for the validly published prokaryotic and fungi species

scientific article published on 22 March 2018

The Global Genome Biodiversity Network (GGBN) Data Standard specification

scientific article

The Mycobacterium avium ssp. paratuberculosis specific mptD gene is required for maintenance of the metabolic homeostasis necessary for full virulence in mouse infections

scientific article

The complete genome sequence of the algal symbiont Dinoroseobacter shibae: a hitchhiker's guide to life in the sea.

scientific article published on 10 September 2009

The complex methylome of the human gastric pathogen Helicobacter pylori

scientific article

The importance of biofilm formation for cultivation of a Micrarchaeon and its interactions with its Thermoplasmatales host

scientific article published in 2022

Think pink: photosynthesis, plasmids and the Roseobacter clade

scientific article published on 26 June 2012

Thiorhodovibrio frisius and Trv. litoralis spp. nov., Two Novel Members from a Clade of Fastidious Purple Sulfur Bacteria That Exhibit Unique Red-Shifted Light-Harvesting Capabilities

scientific article published in 2023

Trajectories and Drivers of Genome Evolution in Surface-Associated Marine Phaeobacter

scientific article

Transcriptional adaptations during long-term persistence of Staphylococcus aureus in the airways of a cystic fibrosis patient

scientific article published on 29 October 2014

Transcriptional response of the photoheterotrophic marine bacterium Dinoroseobacter shibae to changing light regimes

scientific article published on 9 June 2011

Tripartite species interaction: eukaryotic hosts suffer more from phage susceptible than from phage resistant bacteria

scientific article

Trophic networks improve the performance of microbial anodes treating wastewater

scientific article published on 27 September 2019

Two new Rhizobiales species isolated from root nodules of common sainfoin ( Onobrychis viciifolia ) show different plant colonization strategies

scientific article published on 4 March 2022

Vibrio anguillarum Is Genetically and Phenotypically Unaffected by Long-Term Continuous Exposure to the Antibacterial Compound Tropodithietic Acid

scientific article published on 27 May 2016

Vibrio syngnathi sp. nov., a fish pathogen, isolated from the Kiel Fjord

scientific article published in 2023

Whole-genome comparison of high and low virulent Staphylococcus aureus isolates inducing implant-associated bone infections

scientific article

Whole-genome sequencing of a large collection of Myroides odoratimimus and Myroides odoratus isolates and antimicrobial susceptibility studies

scientific article

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