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List of works by Thomas Clavel

A collection of bacterial isolates from the pig intestine reveals functional and taxonomic diversity

scientific article published on 15 December 2020

Acetatifactor muris gen. nov., sp. nov., a novel bacterium isolated from the intestine of an obese mouse

scientific article

Activated ATF6 Induces Intestinal Dysbiosis and Innate Immune Response to Promote Colorectal Tumorigenesis

scientific article published on 29 July 2018

An Integrated Metagenome Catalog Reveals New Insights into the Murine Gut Microbiome

scientific article published on 01 March 2020

An Open-Labeled Study on Fecal Microbiota Transfer in Irritable Bowel Syndrome Patients Reveals Improvement in Abdominal Pain Associated with the Relative Abundance of Akkermansia Muciniphila

scientific article published on 13 November 2018

Analysis of factors contributing to variation in the C57BL/6J fecal microbiota across German animal facilities

scientific article

Arrhythmic Gut Microbiome Signatures Predict Risk of Type 2 Diabetes

scientific article published on 29 June 2020

Associations between habitual diet, metabolic disease, and the gut microbiota using latent Dirichlet allocation

scientific article published on 16 March 2021

Automated analysis of genomic sequences facilitates high-throughput and comprehensive description of bacteria

scientific article published in 2021

Bacterial transformation of dietary lignans in gnotobiotic rats

scientific article published on 8 March 2010

Catechols in caffeic acid phenethyl ester are essential for inhibition of TNF-mediated IP-10 expression through NF-κB-dependent but HO-1- and p38-independent mechanisms in mouse intestinal epithelial cells.

scientific article

Clostridium saccharogumia sp. nov. and Lactonifactor longoviformis gen. nov., sp. nov., two novel human faecal bacteria involved in the conversion of the dietary phytoestrogen secoisolariciresinol diglucoside

scientific article published in January 2007

Comparative genomics and physiology of the butyrate-producing bacterium Intestinimonas butyriciproducens

scientific article

Conversion of daidzein and genistein by an anaerobic bacterium newly isolated from the mouse intestine.

scientific article published on 6 June 2008

Correction: Post-Translational Inhibition of IP-10 Secretion in IEC by Probiotic Bacteria: Impact on Chronic Inflammation

Cultured microbes represent a substantial fraction of the human and mouse gut microbiota

scientific article published on 18 April 2017

Deciphering interactions between the gut microbiota and the immune system via microbial cultivation and minimal microbiomes.

scientific article published on September 2017

Depletion of luminal iron alters the gut microbiota and prevents Crohn's disease-like ileitis.

scientific article published on 12 November 2010

Determinants of post-prandial plasma bile acid kinetics in human volunteers

scientific article

Development of stable isotope dilution assays for the quantitation of intra- and extracellular folate patterns of Bifidobacterium adolescentis

scientific article published on 22 September 2016

Dietary fat and gut microbiota interactions determine diet-induced obesity in mice

scientific article

Discordance between changes in the gut microbiota and pathogenicity in a mouse model of spontaneous colitis.

scientific article

Dual Role of the Adaptive Immune System in Liver Injury and Hepatocellular Carcinoma Development

scientific article published on 27 July 2016

Dysbiotic gut microbiota causes transmissible Crohn's disease-like ileitis independent of failure in antimicrobial defence.

scientific article published on 17 April 2015

Effect of caloric restriction on gut permeability, inflammation markers, and fecal microbiota in obese women

scientific article published on 20 September 2017

Enterorhabdus caecimuris sp. nov., a member of the family Coriobacteriaceae isolated from a mouse model of spontaneous colitis, and emended description of the genus Enterorhabdus Clavel et al. 2009.

scientific article published on 14 August 2009

Erratum: Corrigendum: The Mouse Intestinal Bacterial Collection (miBC) provides host-specific insight into cultured diversity and functional potential of the gut microbiota

scientific article published on 17 October 2016

Exclusive enteral nutrition in active pediatric Crohn disease: Effects on intestinal microbiota and immune regulation

scientific article published on 15 March 2016

Extension of the Segatella copri complex to 13 species with distinct large extrachromosomal elements and associations with host conditions

scientific article published in November 2023

Fetal exposure to maternal inflammation does not affect postnatal development of genetically-driven ileitis and colitis

scientific article

From complex gut communities to minimal microbiomes via cultivation

scientific article published on 15 June 2017

Genome-guided design of a defined mouse microbiota that confers colonization resistance against Salmonella enterica serovar Typhimurium

scientific article

Global Allergy Forum and 3rd Davos Declaration 2015: Atopic dermatitis/Eczema: challenges and opportunities toward precision medicine

scientific article

Gut barrier impairment by high-fat diet in mice depends on housing conditions

scientific article published on 17 December 2015

Gut matters: microbe-host interactions in allergic diseases

scientific article published on 08 February 2012

Gut metabolites and bacterial community networks during a pilot intervention study with flaxseeds in healthy adult men.

scientific article published on 5 June 2015

High microbiota reactivity of adult human intestinal IgA requires somatic mutations

scientific article published on 01 November 2020

High-fat diet alters gut microbiota physiology in mice

scientific article

IMNGS: A comprehensive open resource of processed 16S rRNA microbial profiles for ecology and diversity studies

scientific article

Increased Pancreatic Protease Activity in Response to Antibiotics Impairs Gut Barrier and Triggers Colitis

Intestinal bacterial communities that produce active estrogen-like compounds enterodiol and enterolactone in humans

scientific article

Intestinal microbiota in metabolic diseases: from bacterial community structure and functions to species of pathophysiological relevance

scientific article

Intestinimonas butyriciproducens gen. nov., sp. nov., a butyrate-producing bacterium from the mouse intestine.

scientific article

Investigation of Adiposity Measures and Operational Taxonomic unit (OTU) Data Transformation Procedures in Stool Samples from a German Cohort Study Using Machine Learning Algorithms

scientific article published on 10 April 2020

Isoflavones and functional foods alter the dominant intestinal microbiota in postmenopausal women

scientific article published on 01 December 2005

Isolation of bacteria from mouse caecal samples and description of Bacteroides sartorii sp. nov.

scientific article

Isolation of bacteria from the ileal mucosa of TNFdeltaARE mice and description of Enterorhabdus mucosicola gen. nov., sp. nov.

scientific article published on 19 June 2009

Lignan transformation by gut bacteria lowers tumor burden in a gnotobiotic rat model of breast cancer

scientific article published on 10 November 2011

Measurements of Intra- and Extra-Cellular 5-Methyltetrahydrofolate Indicate that Bifidobacterium Adolescentis DSM 20083T and Bifidobacterium Pseudocatenulatum DSM 20438T Do Not Actively Excrete 5-Methyltetrahydrofolate In vitro.

scientific article published on 21 March 2017

Metabolic activation of intrahepatic CD8+ T cells and NKT cells causes nonalcoholic steatohepatitis and liver cancer via cross-talk with hepatocytes

scientific article

Metabolic diversity of the intestinal microbiota: implications for health and disease

scientific article published on March 2007

MiMiC: a bioinformatic approach for generation of synthetic communities from metagenomes

scientific article published on 03 June 2021

Microbiome sequencing: challenges and opportunities for molecular medicine.

scientific article published on 29 April 2016

Mining gut microbiome oligopeptides by functional metaproteome display

scientific article

Molecular interactions between bacteria, the epithelium, and the mucosal immune system in the intestinal tract: implications for chronic inflammation.

scientific article published on September 2007

Murimonas intestini gen. nov., sp. nov., an acetate-producing bacterium of the family Lachnospiraceae isolated from the mouse gut.

scientific article

NFDI4Microbiota – national research data infrastructure for microbiota research

Occurrence and activity of human intestinal bacteria involved in the conversion of dietary lignans

scientific article published on 15 December 2005

Oral versus intravenous iron replacement therapy distinctly alters the gut microbiota and metabolome in patients with IBD.

scientific article published on 4 February 2016

Orally administered allyl sulfides from garlic ameliorate murine colitis

scientific article published on 21 January 2015

Parvibacter caecicola gen. nov., sp. nov., a bacterium of the family Coriobacteriaceae isolated from the caecum of a mouse

scientific article

Performing Skin Microbiome Research: A Method to the Madness

scientific article

Phylogeny of human intestinal bacteria that activate the dietary lignan secoisolariciresinol diglucoside

scientific article published in March 2006

Physiological relevance of food grade microcapsules: Impact of milk protein based microcapsules on inflammation in mouse models for inflammatory bowel diseases.

scientific article published on 28 May 2015

Post-translational inhibition of IP-10 secretion in IEC by probiotic bacteria: impact on chronic inflammation

scientific article

Posttranslational inhibition of proinflammatory chemokine secretion in intestinal epithelial cells: implications for specific IBD indications

scientific article published on September 2010

Randomized controlled trial on the impact of early-life intervention with bifidobacteria on the healthy infant fecal microbiota and metabolome

scientific article

Rapid analysis of bile acids in different biological matrices using LC-ESI-MS/MS for the investigation of bile acid transformation by mammalian gut bacteria

scientific article published on 7 November 2016

Rhea: a transparent and modular R pipeline for microbial profiling based on 16S rRNA gene amplicons

scientific article published on 11 January 2017

Sequence and cultivation study of Muribaculaceae reveals novel species, host preference, and functional potential of this yet undescribed family

scientific article published on 19 February 2019

Short-Term Overfeeding with Dairy Cream Does Not Modify Gut Permeability, the Fecal Microbiota, or Glucose Metabolism in Young Healthy Men.

scientific article published in January 2018

Streptococcus danieliae sp. nov., a novel bacterium isolated from the caecum of a mouse.

scientific article

Synbiotic-driven improvement of metabolic disturbances is associated with changes in the gut microbiome in diet-induced obese mice

scientific article published on 05 February 2019

The Compromised Mucosal Immune System of β7 Integrin-Deficient Mice Has Only Minor Effects on the Fecal Microbiota in Homeostasis

scientific article published on 04 October 2019

The Mouse Intestinal Bacterial Collection (miBC) provides host-specific insight into cultured diversity and functional potential of the gut microbiota

scientific article published on 8 August 2016

The gut bacterium <i>Extibacter muris</i> produces secondary bile acids and influences liver physiology in gnotobiotic mice

scientific article published on 01 January 2021

The gut microbiota drives the impact of bile acids and fat source in diet on mouse metabolism

scientific article published on 02 August 2018

The gut microbiota promotes hepatic fatty acid desaturation and elongation in mice

scientific article published in Nature Communications

The mouse gut microbiome revisited: From complex diversity to model ecosystems.

scientific article

The stool microbiota of insulin resistant women with recent gestational diabetes, a high risk group for type 2 diabetes

scientific article published on 17 August 2015

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